View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_15 (Length: 415)
Name: NF3030_high_15
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 160 - 397
Target Start/End: Complemental strand, 19504892 - 19504655
Alignment:
| Q |
160 |
cttacttttgtcactcgtcttcacccaaaaaccctgtttgcaccttaaaatgattatcatgttgggcaaattcggtaaataggtgagtaaactattaagc |
259 |
Q |
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| T |
19504892 |
cttacttttgtcactcgtcttcacccaaaaaccctgtttacaccttaaaataattatcatgttgggcaaattaggtaaataggtgattaaactattaggc |
19504793 |
T |
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| Q |
260 |
taggacgcccctcagtcgagtgaaggatatgaaatgttagaggaattgggagagggaaccgattttttctcaaggaaactaactaagaatgtgggtcata |
359 |
Q |
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| T |
19504792 |
gaggacgcccctcagtcgagtgaaggatatgaaatgttagagaaattgggagagtgaacggattttttctcaagaaaactaactaagaatgtgggtcata |
19504693 |
T |
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| Q |
360 |
aaaggctcagagctgagtcaaagcatagtgagactaca |
397 |
Q |
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| T |
19504692 |
aaaggctcagaggtgagtcaaagcatagtgggactaca |
19504655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 19505051 - 19504940
Alignment:
| Q |
1 |
tacatatacccattcttctcactccacacaaaatccctttcactctcaatcttagaaaaccatcgccactcatctttactcctctcattctctagcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
19505051 |
tacatatacccattcttctcactccacacaaaatccatttcactctcaatcttagaaaatcatcgccactcatctttgctcctctcattctctagcccag |
19504952 |
T |
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| Q |
101 |
aaactgaaaaaa |
112 |
Q |
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| T |
19504951 |
aaactgaaaaaa |
19504940 |
T |
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