View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_16 (Length: 414)
Name: NF3030_high_16
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 399
Target Start/End: Original strand, 49684699 - 49685092
Alignment:
| Q |
9 |
agcaaaggaaagtcgtccctagaggagaa---gaggtaaagggtagctctatgttcagcagtggtgctgttggtgatgataatagctttagggttttggc |
105 |
Q |
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| T |
49684699 |
agcaaaggaaagtcgtccctagaggagaagaagaggtaaagggtagctctatgttcagcagtggtgctgttggtgatgataatagctttagggttttggc |
49684798 |
T |
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| Q |
106 |
tttaacttaatttgatcagaaactgaaactactggaattagttttaaaagatgaaaaacgatatacatagttttgcactttcttaataagaaaagaaaaa |
205 |
Q |
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| T |
49684799 |
tttaacttaatttgatcagaaactgaaactactggaattagttttaaaagatgaaaaacgatatacatagttttgcactttcttaataagaaaagaaaaa |
49684898 |
T |
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| Q |
206 |
caacgcattactgaacaagttcaagctgttgaattgctagtacttgttggttatttggcggttcattttcggttaaatatattgttcagtcagcttagtg |
305 |
Q |
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| T |
49684899 |
caatgcattactgaacaagttcaagccgttgaattgctagtacttgttgattatttggcggttctttttcggttaaatatattgttcagtcagcttagtg |
49684998 |
T |
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| Q |
306 |
atctatgtttctagatatacttctaattttctctaaggcactttatttttaatccgaaaagataaatactacggaaactcacatacacaagtgt |
399 |
Q |
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| T |
49684999 |
atctatgtttctagatatacttctaattttctccaaggcactttatttttaatccgaaaagataaatactacggaaactcacatacacaagtgt |
49685092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 49689482 - 49689578
Alignment:
| Q |
239 |
ttgctagtacttgttggttatttggcggttcattttcggttaaatata-ttgttcagtcagcttagtgatctatgtttctagatatacttctaattttct |
337 |
Q |
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| T |
49689482 |
ttgctagtacctgttgattatttggcggtt--ttttcagttaaatccatttgttctgtcagctttgagatctatgtttct--atacacttcttattttct |
49689577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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