View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_18 (Length: 379)
Name: NF3030_high_18
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 34161354 - 34161000
Alignment:
| Q |
20 |
tgaagaatattcaccttctgggaagcttcataaacaactcatttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacat |
119 |
Q |
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| T |
34161354 |
tgaagaatattcaccttctgggaagcttcataaacaactcacttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacat |
34161255 |
T |
|
| Q |
120 |
aaggaaaacacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaa |
219 |
Q |
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| T |
34161254 |
aaggaaagcacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattataaagtagaaattgtgattcataatcgtttaaa |
34161155 |
T |
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| Q |
220 |
gagagaagaaatttaactataaatttaattagtaaattatgagtggtgttggaatcctatagaatgctagtcttgttgaggttggggttttggattctta |
319 |
Q |
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| T |
34161154 |
gagagaagaaatttaactataaatttaattagtaagttatgagtggtgttggaatcctatagaatgctagtcttgttgaggttggggttttggattctta |
34161055 |
T |
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| Q |
320 |
ggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtgctgct |
374 |
Q |
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| T |
34161054 |
ggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgct |
34161000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 179 - 374
Target Start/End: Original strand, 31979504 - 31979699
Alignment:
| Q |
179 |
aggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
278 |
Q |
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| T |
31979504 |
aggtattatagagtagaaattatgattcataatcgtttaaagagagtagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
31979603 |
T |
|
| Q |
279 |
tagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtgctgct |
374 |
Q |
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| T |
31979604 |
gagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgct |
31979699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 25673134 - 25673228
Alignment:
| Q |
135 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaa |
229 |
Q |
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| T |
25673134 |
aggtaagggcacttcctcatacttatcatattagactaatggttagatattatagagtagaaagtatgattcataaccgtttaaaaagaaaagaa |
25673228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 14490473 - 14490591
Alignment:
| Q |
135 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
234 |
Q |
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||||||||| | ||| ||||||| ||||||||| |||||||||||| |||| | |||||||| | |||||||||| ||||||||||| |||||||| | |
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| T |
14490473 |
aggtaagggcacttctccatacttatcatattaaactaatggttagatattgtagagtagaaagtatgattcataaccgtttaaagaggaaagaaattga |
14490572 |
T |
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| Q |
235 |
actataaatttaattagta |
253 |
Q |
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| T |
14490573 |
aatataattttatttagta |
14490591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 43656365 - 43656485
Alignment:
| Q |
135 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
234 |
Q |
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||||||||| | ||||||||||| | ||||||| ||||||||||| |||||| |||||||| | |||| ||||| |||||||||||| |||||||| | |
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| T |
43656365 |
aggtaagggcacttccccatacttaacatattaaactaatggttatatattatagagtagaaagtatgatccataaccgtttaaagagaaaagaaattca |
43656464 |
T |
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| Q |
235 |
actataaatttaattagtaaa |
255 |
Q |
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| |||| |||| |||||||| |
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| T |
43656465 |
aatatacttttatttagtaaa |
43656485 |
T |
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