View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_2 (Length: 668)
Name: NF3030_high_2
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 3803727 - 3804154
Alignment:
| Q |
14 |
ccgaggtcaatttgaatagaaaaatatggtcaaccatccactccctcaaaaaagaaatgtgtagagattaggtagatgtcaaccgagcaatcaacagtat |
113 |
Q |
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| T |
3803727 |
ccgaggtcaatttgaatagaaaaat--ggtcaaccatccactccctcaaaaaagaaatgtgtagagattaggtagatgtcagccgagcaatcaacaatat |
3803824 |
T |
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| Q |
114 |
atgtataattttgcactcaactcatccgcatgaacaaaatatcaatagactaagtcaaaacatgcatacatattatcttaataataggaaggatggagaa |
213 |
Q |
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| T |
3803825 |
atgtataattttgccctcaactcatccgtatgaacaaaatatcaatagactaagtcaaaacatgcatacctattatcttaataataggaaggatggagaa |
3803924 |
T |
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| Q |
214 |
catggatcgttgatatgaaaatgtataacttaggcaacaagacaattttaggttgtaattcagtcaaccgagtagttactcatattagtaatattagcca |
313 |
Q |
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| T |
3803925 |
catggatcgttgatatgaaaatgtataacttaggcaacaagacaattttaggttgtaattcagtcaaccga-tagttacttatattagtaatgttagtca |
3804023 |
T |
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| Q |
314 |
tgatcattcatgttgaaatatggcagttagtggatcaaaattgtggcaggaaatttttgggcaggttgcttagttaatctaagtctataaatacctcatt |
413 |
Q |
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| T |
3804024 |
tgatcattcatgttgaaatatggtagttagtggatcaaaattgtggcaggaaatttttggggaggttgcttagttaatctaagtctataaatacctcatt |
3804123 |
T |
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| Q |
414 |
ggaaagattattcaagacacataaaataaaa |
444 |
Q |
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| T |
3804124 |
ggaaagattattcaagacacataaaataaaa |
3804154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 514 - 653
Target Start/End: Original strand, 3804225 - 3804364
Alignment:
| Q |
514 |
tagtagttcttgaaacgccttcgtactgttttcatgattgtcaatggaccccacaaactaacaagagttatttcagtgtgctttgtccttactcaaacac |
613 |
Q |
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| T |
3804225 |
tagtagttcttgaaacgcctccatactgctttcataattgtcgattgaccccacaaaccaacaagagtcatttcagtgtgctttgtccttactcaaacac |
3804324 |
T |
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| Q |
614 |
tttatagaaaactttccagaagcttacccatccaaatatt |
653 |
Q |
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| T |
3804325 |
tttatagaaaactttccggaagcttatccatccaaatatt |
3804364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 608
Target Start/End: Original strand, 49996566 - 49996614
Alignment:
| Q |
560 |
gaccccacaaactaacaagagttatttcagtgtgctttgtccttactca |
608 |
Q |
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| T |
49996566 |
gaccccacaaactaacaagagtcttttcagcgtgttttgtcctcactca |
49996614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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