View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_20 (Length: 347)
Name: NF3030_high_20
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 30870381 - 30870197
Alignment:
| Q |
16 |
cagcaacatgctcgggtgcacagattacttgattatagtataattatacgtcaatatatatat--tctgtattataaatactttttaaaaaatgtgtaaa |
113 |
Q |
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| T |
30870381 |
cagcaacatgctcgggtgcacggattacttgattatagtataattatacgtcaatatatatatattctgtattataaatactttttaaaaaatgtgtaaa |
30870282 |
T |
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| Q |
114 |
gaaaattcaagctgcacatatcaacattttctaactaac------taatgtggattcattaaatttaacttttttatatattttt |
192 |
Q |
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| T |
30870281 |
gaaaattcaagctgcacatatcaacattttctaactaactaatagtaatgtggactcattaaatttaacttttttatatattttt |
30870197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 30870015 - 30869930
Alignment:
| Q |
188 |
tttttatacaaatttatattggatgtcccttgttgagactttatatctcaactaacctaaactacaaaatattattcatataaggt |
273 |
Q |
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| T |
30870015 |
tttttatacaaatttatattggatgtcccttgttgagactttatatctcaactaacctaaactacaaaatatcattcatataaggt |
30869930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 30869896 - 30869861
Alignment:
| Q |
302 |
acaaaatatcagtattttttatgcataatagtataa |
337 |
Q |
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| T |
30869896 |
acaaaatatcagtattttttatgcataatagtataa |
30869861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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