View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_25 (Length: 309)

Name: NF3030_high_25
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_25
NF3030_high_25
[»] chr6 (23 HSPs)
chr6 (15-291)||(31039606-31039882)
chr6 (67-176)||(8977518-8977627)
chr6 (98-177)||(29730294-29730373)
chr6 (98-176)||(14228209-14228286)
chr6 (98-176)||(28943852-28943929)
chr6 (99-197)||(29863386-29863484)
chr6 (98-177)||(3485681-3485760)
chr6 (98-197)||(33017721-33017819)
chr6 (77-195)||(10887027-10887145)
chr6 (77-174)||(22974635-22974731)
chr6 (77-174)||(23813670-23813766)
chr6 (67-172)||(30591215-30591320)
chr6 (108-174)||(2830773-2830839)
chr6 (67-169)||(30623350-30623452)
chr6 (108-176)||(5362985-5363053)
chr6 (77-153)||(6016896-6016972)
chr6 (66-176)||(17154639-17154750)
chr6 (98-173)||(18332771-18332846)
chr6 (109-172)||(31069675-31069738)
chr6 (54-176)||(1017817-1017939)
chr6 (98-176)||(17552670-17552747)
chr6 (76-161)||(30708024-30708108)
chr6 (96-156)||(33987244-33987304)
[»] chr2 (41 HSPs)
chr2 (54-176)||(9450274-9450396)
chr2 (54-176)||(20566056-20566178)
chr2 (61-176)||(34817561-34817676)
chr2 (54-176)||(15411661-15411783)
chr2 (68-176)||(23932582-23932690)
chr2 (98-196)||(34214034-34214132)
chr2 (106-174)||(25998093-25998161)
chr2 (54-197)||(19228422-19228564)
chr2 (106-197)||(43388857-43388948)
chr2 (54-176)||(14377442-14377563)
chr2 (54-176)||(16919193-16919314)
chr2 (54-176)||(27665083-27665204)
chr2 (98-176)||(40562160-40562238)
chr2 (108-197)||(12016663-12016752)
chr2 (85-177)||(2051630-2051722)
chr2 (54-169)||(9747341-9747456)
chr2 (98-176)||(5583641-5583718)
chr2 (67-173)||(43806380-43806486)
chr2 (108-176)||(39904140-39904208)
chr2 (67-162)||(11660971-11661065)
chr2 (108-203)||(16126651-16126746)
chr2 (77-176)||(22705472-22705570)
chr2 (98-172)||(5853546-5853622)
chr2 (104-173)||(7720135-7720204)
chr2 (98-172)||(16493615-16493691)
chr2 (98-172)||(22704556-22704632)
chr2 (102-163)||(24729664-24729725)
chr2 (98-172)||(25948058-25948134)
chr2 (77-166)||(45062225-45062314)
chr2 (98-177)||(38248503-38248580)
chr2 (98-169)||(40503064-40503135)
chr2 (139-197)||(29795054-29795112)
chr2 (60-125)||(2544255-2544320)
chr2 (111-176)||(14285371-14285435)
chr2 (77-138)||(15231886-15231947)
chr2 (107-176)||(22162169-22162237)
chr2 (108-197)||(26229946-26230034)
chr2 (106-143)||(38327858-38327895)
chr2 (98-138)||(25068561-25068600)
chr2 (54-122)||(35729188-35729256)
chr2 (102-138)||(39367114-39367150)
[»] scaffold0073 (1 HSPs)
scaffold0073 (54-173)||(16574-16692)
[»] chr8 (45 HSPs)
chr8 (54-173)||(12132003-12132122)
chr8 (97-169)||(5573312-5573384)
chr8 (67-134)||(7393296-7393363)
chr8 (77-197)||(14816188-14816307)
chr8 (77-197)||(14829433-14829552)
chr8 (54-176)||(35678314-35678435)
chr8 (68-197)||(6818013-6818142)
chr8 (107-176)||(7140550-7140619)
chr8 (106-174)||(8284660-8284728)
chr8 (97-176)||(13496813-13496893)
chr8 (98-197)||(2161384-2161482)
chr8 (86-197)||(3306126-3306236)
chr8 (98-177)||(44222517-44222595)
chr8 (98-176)||(9801686-9801763)
chr8 (66-176)||(20514650-20514760)
chr8 (107-176)||(33514592-33514661)
chr8 (54-129)||(9022099-9022177)
chr8 (66-153)||(34741716-34741802)
chr8 (103-176)||(9824976-9825049)
chr8 (72-176)||(35583383-35583487)
chr8 (98-172)||(40226070-40226146)
chr8 (108-176)||(10129121-10129189)
chr8 (101-169)||(12346030-12346098)
chr8 (109-197)||(13328034-13328122)
chr8 (103-138)||(26195495-26195530)
chr8 (101-176)||(26364076-26364150)
chr8 (54-176)||(26682085-26682207)
chr8 (98-173)||(34869605-34869680)
chr8 (102-173)||(37264521-37264592)
chr8 (98-173)||(38843724-38843799)
chr8 (98-173)||(45005990-45006065)
chr8 (107-153)||(15868052-15868098)
chr8 (66-135)||(34249735-34249805)
chr8 (54-176)||(39701842-39701963)
chr8 (98-191)||(4080476-4080569)
chr8 (98-191)||(4084625-4084718)
chr8 (98-191)||(4102932-4103025)
chr8 (107-168)||(38048029-38048090)
chr8 (107-143)||(6850669-6850705)
chr8 (128-176)||(7750685-7750733)
chr8 (107-191)||(9580201-9580285)
chr8 (54-138)||(9743917-9744000)
chr8 (98-166)||(10974637-10974705)
chr8 (116-176)||(19343937-19343997)
chr8 (109-197)||(40210914-40211002)
[»] chr7 (35 HSPs)
chr7 (54-173)||(7040291-7040409)
chr7 (60-177)||(3530159-3530275)
chr7 (66-176)||(19868131-19868241)
chr7 (98-173)||(8091395-8091470)
chr7 (54-197)||(19889337-19889479)
chr7 (54-197)||(33342985-33343127)
chr7 (80-173)||(31066800-31066894)
chr7 (98-176)||(39869140-39869218)
chr7 (62-135)||(2276733-2276806)
chr7 (98-171)||(11680101-11680176)
chr7 (103-191)||(42750291-42750378)
chr7 (109-203)||(9331952-9332046)
chr7 (77-191)||(12085993-12086106)
chr7 (98-168)||(38554263-38554333)
chr7 (107-171)||(24639564-24639628)
chr7 (98-138)||(47707967-47708007)
chr7 (54-197)||(7169999-7170141)
chr7 (56-131)||(36991041-36991116)
chr7 (98-173)||(46290031-46290105)
chr7 (54-176)||(5909321-5909442)
chr7 (54-168)||(23982794-23982908)
chr7 (106-176)||(25709490-25709560)
chr7 (67-173)||(45501479-45501585)
chr7 (66-135)||(7899537-7899606)
chr7 (77-138)||(12624692-12624753)
chr7 (98-151)||(24699177-24699230)
chr7 (100-176)||(12650838-12650914)
chr7 (108-176)||(24250331-24250399)
chr7 (108-176)||(39757202-39757270)
chr7 (101-169)||(47201258-47201326)
chr7 (109-168)||(16800578-16800636)
chr7 (109-176)||(36548553-36548620)
chr7 (99-166)||(38759975-38760042)
chr7 (76-138)||(8420894-8420956)
chr7 (108-205)||(3561970-3562067)
[»] chr1 (44 HSPs)
chr1 (54-173)||(6307523-6307641)
chr1 (98-176)||(36490796-36490874)
chr1 (67-176)||(39627623-39627732)
chr1 (104-172)||(11744917-11744985)
chr1 (54-144)||(49392132-49392220)
chr1 (67-173)||(23591718-23591824)
chr1 (98-176)||(25465176-25465253)
chr1 (98-197)||(1502803-1502901)
chr1 (76-135)||(9516639-9516698)
chr1 (54-197)||(39150366-39150508)
chr1 (98-176)||(34050366-34050444)
chr1 (54-176)||(41624847-41624968)
chr1 (98-191)||(3121121-3121213)
chr1 (101-166)||(51613058-51613122)
chr1 (107-191)||(8062207-8062291)
chr1 (108-176)||(44918042-44918110)
chr1 (98-197)||(6520708-6520806)
chr1 (54-197)||(6754468-6754610)
chr1 (54-197)||(17919450-17919592)
chr1 (103-138)||(19277843-19277878)
chr1 (77-172)||(30363057-30363152)
chr1 (80-135)||(35438773-35438828)
chr1 (107-186)||(40799350-40799429)
chr1 (98-176)||(7520080-7520158)
chr1 (98-176)||(23576497-23576574)
chr1 (98-176)||(25956666-25956744)
chr1 (98-168)||(30109089-30109159)
chr1 (80-138)||(33048177-33048235)
chr1 (107-176)||(32543142-32543211)
chr1 (107-176)||(43317507-43317575)
chr1 (67-176)||(47355430-47355538)
chr1 (115-176)||(51382389-51382450)
chr1 (108-176)||(313767-313835)
chr1 (74-134)||(13241816-13241876)
chr1 (98-191)||(5857991-5858084)
chr1 (107-173)||(22167355-22167421)
chr1 (98-168)||(51920514-51920584)
chr1 (112-173)||(22331643-22331704)
chr1 (83-176)||(38539104-38539196)
chr1 (83-176)||(38561322-38561414)
chr1 (72-125)||(52337834-52337887)
chr1 (106-138)||(2222326-2222358)
chr1 (67-131)||(26978110-26978174)
chr1 (99-131)||(35941106-35941138)
[»] chr4 (42 HSPs)
chr4 (66-176)||(2096888-2096998)
chr4 (98-191)||(34941280-34941373)
chr4 (67-176)||(49181089-49181198)
chr4 (67-197)||(52391294-52391424)
chr4 (98-176)||(42480005-42480083)
chr4 (66-135)||(51070447-51070516)
chr4 (77-176)||(6875518-6875617)
chr4 (98-176)||(9759225-9759302)
chr4 (67-197)||(19450952-19451082)
chr4 (71-153)||(37784916-37784998)
chr4 (86-176)||(39876848-39876937)
chr4 (98-176)||(50352320-50352397)
chr4 (98-174)||(35645084-35645163)
chr4 (60-153)||(54506463-54506556)
chr4 (108-176)||(36000032-36000100)
chr4 (67-175)||(38222304-38222412)
chr4 (99-176)||(53376493-53376574)
chr4 (101-176)||(49332350-49332425)
chr4 (98-137)||(55813920-55813959)
chr4 (77-135)||(16667446-16667504)
chr4 (67-173)||(19468214-19468320)
chr4 (107-176)||(23553587-23553657)
chr4 (67-173)||(27019280-27019386)
chr4 (54-176)||(27756579-27756700)
chr4 (67-173)||(51691362-51691467)
chr4 (107-176)||(24993548-24993617)
chr4 (80-168)||(25843316-25843405)
chr4 (98-135)||(27298949-27298986)
chr4 (98-138)||(4779519-4779559)
chr4 (77-176)||(7349706-7349804)
chr4 (77-176)||(10389330-10389428)
chr4 (107-138)||(16069299-16069330)
chr4 (98-173)||(23545496-23545571)
chr4 (98-173)||(24297392-24297467)
chr4 (109-188)||(29190909-29190988)
chr4 (107-173)||(17409844-17409910)
chr4 (80-130)||(33559264-33559314)
chr4 (98-176)||(40049576-40049653)
chr4 (98-143)||(33632285-33632330)
chr4 (54-151)||(44571568-44571664)
chr4 (98-138)||(8736893-8736933)
chr4 (108-176)||(10813587-10813655)
[»] chr3 (41 HSPs)
chr3 (54-195)||(46492382-46492523)
chr3 (96-176)||(15862986-15863066)
chr3 (98-176)||(49396368-49396446)
chr3 (68-197)||(37055419-37055548)
chr3 (54-197)||(11610911-11611053)
chr3 (98-177)||(53794780-53794859)
chr3 (54-172)||(13495315-13495433)
chr3 (56-157)||(14847041-14847140)
chr3 (106-191)||(46845531-46845616)
chr3 (67-138)||(23320125-23320196)
chr3 (67-197)||(32321776-32321903)
chr3 (98-176)||(2571286-2571363)
chr3 (98-176)||(12515557-12515634)
chr3 (60-152)||(30472935-30473028)
chr3 (67-131)||(7940854-7940918)
chr3 (108-176)||(51339276-51339344)
chr3 (108-176)||(51618067-51618135)
chr3 (102-173)||(9710964-9711035)
chr3 (77-136)||(23638111-23638170)
chr3 (98-176)||(10307784-10307861)
chr3 (111-177)||(53718322-53718388)
chr3 (67-173)||(54527758-54527864)
chr3 (107-176)||(20938074-20938143)
chr3 (103-176)||(24569325-24569398)
chr3 (99-152)||(53537075-53537128)
chr3 (67-143)||(23803098-23803174)
chr3 (98-138)||(33474556-33474596)
chr3 (101-176)||(47386939-47387015)
chr3 (54-174)||(50364210-50364329)
chr3 (67-138)||(1569242-1569313)
chr3 (77-136)||(7220173-7220232)
chr3 (107-206)||(37444134-37444232)
chr3 (67-130)||(51567869-51567932)
chr3 (98-136)||(35414892-35414930)
chr3 (53-143)||(54320719-54320807)
chr3 (77-176)||(2379134-2379230)
chr3 (108-197)||(3863326-3863415)
chr3 (106-138)||(3214977-3215009)
chr3 (77-125)||(26486439-26486487)
chr3 (77-173)||(38389467-38389563)
chr3 (98-134)||(39248510-39248546)
[»] scaffold0305 (2 HSPs)
scaffold0305 (60-172)||(18041-18153)
scaffold0305 (71-138)||(17844-17911)
[»] chr5 (26 HSPs)
chr5 (66-176)||(39990088-39990198)
chr5 (54-197)||(2795520-2795662)
chr5 (78-176)||(28629896-28629993)
chr5 (69-138)||(40166337-40166406)
chr5 (98-197)||(11636728-11636827)
chr5 (98-197)||(36597576-36597674)
chr5 (100-202)||(11250042-11250143)
chr5 (98-176)||(30839799-30839876)
chr5 (54-171)||(35469575-35469693)
chr5 (107-191)||(9184210-9184294)
chr5 (108-176)||(11375977-11376045)
chr5 (67-135)||(15241002-15241070)
chr5 (100-143)||(11264644-11264687)
chr5 (67-138)||(15837330-15837401)
chr5 (85-176)||(40512969-40513059)
chr5 (54-176)||(8103619-8103740)
chr5 (67-133)||(26265096-26265162)
chr5 (77-138)||(18150469-18150530)
chr5 (98-166)||(6863584-6863651)
chr5 (66-182)||(10665016-10665131)
chr5 (98-197)||(5958206-5958305)
chr5 (98-173)||(18841788-18841863)
chr5 (66-156)||(38994126-38994216)
chr5 (98-131)||(1203103-1203136)
chr5 (86-138)||(15820281-15820333)
chr5 (107-159)||(31567583-31567635)
[»] scaffold0061 (1 HSPs)
scaffold0061 (54-176)||(52818-52939)
[»] scaffold0017 (1 HSPs)
scaffold0017 (54-176)||(145695-145816)
[»] scaffold0727 (1 HSPs)
scaffold0727 (107-176)||(5708-5778)
[»] scaffold0149 (1 HSPs)
scaffold0149 (98-138)||(22519-22559)
[»] scaffold0111 (2 HSPs)
scaffold0111 (114-176)||(40997-41059)
scaffold0111 (77-173)||(37176-37272)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 31039882 - 31039606
Alignment:
Q  15 atcactgttttatgggttttctatcatgtctatttttcattaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaat 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  31039882 atcactgttttatgggttttctatcatgtgtatttttcattaaagtagtatgtttgtattgtaacttgtgtattttctattataaatataactttttaat 31039783  T
Q  115 aaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgttttatttctaaacac 214  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  31039782 aaataatttttgtttttcaataaatagttactatttttaattactttaacacgtgcaatattaaacatgttagacaaccccttgttttatttctaaacac 31039683  T
Q  215 ctatatatcaatcttgcgggtttctttctagctagcatattttctagacctcactatctagtggcatgtagcaagac 291  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31039682 ctatatatcaatcttgccggtttctttctggctagcatattttctagacctcaccatctagtggcatgtagcaagac 31039606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 8977518 - 8977627
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||||||||||||||||| ||||| ||| | |||| |||||||| ||||||| |||||||||||||||| ||  ||||||| ||||| || | |||||||    
T  8977518 tttgtattgtaacttgtgcattttatattaaatatgtaacttttcaataaatgattgttgtttttcaattaaaggttgctacttttagtttccttaacat 8977617  T
Q  167 gtgcaatatt 176  Q
    ||||||||||    
T  8977618 gtgcaatatt 8977627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 29730373 - 29730294
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||  || |||||||  ||||||||| ||||||||||    
T  29730373 atatataactttttaataaataactgttgtttttcaataaaaacttattaattttaatagctttaacatatgcaatatta 29730294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 14228209 - 14228286
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| |||||||||| |||||||||||||||||    
T  14228209 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttaattaccttaacatgtgcaatatt 14228286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 28943852 - 28943929
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| |||||||||| |||||||||||||||||    
T  28943852 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttaattaccttaacatgtgcaatatt 28943929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 29863386 - 29863484
Alignment:
Q  99 tatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||| ||||||||||||||||||| || |||||||||  | |||| ||||||||| || |||||||||||||||||||  |||| ||| |||| |||||    
T  29863386 tataaaactttttaataaataattattctttttcaatgtaaagttactatttttagttcctttaacatgtgcaatattgcacatgttagacaaaccctt 29863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 3485681 - 3485760
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    ||||||||||||||||||| | ||| ||||||||||||||| || ||||| ||||| || ||||||||| || |||||||    
T  3485681 atatataactttttaataattgattattgtttttcaataaaaaggtgctaattttagttcctttaacatatgtaatatta 3485760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 33017819 - 33017721
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||  ||||||||||||| |||| |||||| | |||||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  33017819 atatataactttttgttaaataattgttggtttt-aataaaaacttgctaattttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 33017721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 10887145 - 10887027
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||| ||| | |||| || ||||||||||||||| | ||||||||||||||| | || ||| |||||  ||  |||||||||||||| ||    
T  10887145 aacttgtgtattttatattaaatatgtagctttttaataaataagttttgtttttcaataaaaaattactacttttagatatcttaacatgtgcaatgtt 10887046  T
Q  177 agacatattaaacaacccc 195  Q
      |||| ||| ||||||||    
T  10887045 gcacatgttagacaacccc 10887027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 22974635 - 22974731
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaata 174  Q
    ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||    
T  22974635 aacttgtgttttttatattaaatatgtaactttt-aatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaata 22974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 23813766 - 23813670
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaata 174  Q
    ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||    
T  23813766 aacttgtgttttttatattaaatatgtaactttt-aatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaata 23813670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 30591215 - 30591320
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||| |||||||||||| |||||| ||| | || ||||||||||| ||||||||||||  |||||||||||| | || |||  |||| || | |||||||    
T  30591215 tttgcattgtaacttgtatattttgtattaaatgtataactttttgataaataattgtattttttcaataaaaacttactacatttagttgcgttaacat 30591314  T
Q  167 gtgcaa 172  Q
    ||||||    
T  30591315 gtgcaa 30591320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 2830773 - 2830839
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaata 174  Q
    ||||||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||    
T  2830773 ttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaata 2830839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 30623452 - 30623350
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||  ||||||||    
T  30623452 tttgtattgaaacttgtacatttgatattaaatataaaacttttgaataaataattgttgtttttcaagaaaaagttactactattagttgttttaacat 30623353  T
Q  167 gtg 169  Q
    |||    
T  30623352 gtg 30623350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 5362985 - 5363053
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| || |||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||    
T  5362985 ttttaatcaacaattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatatt 5363053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 6016972 - 6016896
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||  ||| | |||||||||||||||| |||||| |||||||||||||| || |||| ||| |||||    
T  6016972 aacttgtgcatttcatattaaatatataactttttaaaaaataagtgttgtttttcaatgaaaagttactactttta 6016896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 17154750 - 17154639
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatag-ttgctatttttaattactttaac 164  Q
    |||||| ||| |||||||||||| | ||| | || ||||| |||||||||| | ||| ||||||||||||||| |  ||  || |||||||| |||||||    
T  17154750 gtttgttttgaaacttgtgtattctatattaaatgtataattttttaataattgattattgtttttcaataaaaaaattaatacttttaatttctttaac 17154651  T
Q  165 atgtgcaatatt 176  Q
    |||| |||||||    
T  17154650 atgtacaatatt 17154639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 18332771 - 18332846
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||| ||||||||||||||| | ||||||||||||||| | || ||| |||||  ||  ||||||||||||||    
T  18332771 atatatagctttttaataaataagttttgtttttcaataaaaaattactacttttagatatcttaacatgtgcaat 18332846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 31069675 - 31069738
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||| ||||||||||| ||||||||||| | || ||| ||||| |||| |||||||||||||    
T  31069675 tttaatcaataattgttggttttcaataaaaacttactacttttagttaccttaacatgtgcaa 31069738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 1017817 - 1017939
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| || ||||| ||||| ||| | |||| ||| |||||||||||||||||||| |||||||  || |||| ||| |||||    
T  1017817 ttaaagtagtaactttgacttgaaagttgtgcattttatattaaatatgtaaatttttaataaataattgttggttttcaacgaaaagttactactttta 1017916  T
Q  154 attactttaacatgtgcaatatt 176  Q
     ||| || | |||||||| ||||    
T  1017917 gttatttaatcatgtgcagtatt 1017939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 17552670 - 17552747
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| |||||  ||||||||||||| ||| | ||||| | |||||| ||||| |||| |||||||||||||||||    
T  17552670 atatataattttttgttaaataattgttggttt-cgataaaaacttgctacttttagttaccttaacatgtgcaatatt 17552747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 30708108 - 30708024
Alignment:
Q  76 taacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattacttt 161  Q
    |||||| | |||||| ||| | |||||||||||||||||  ||||||||||||||  |||||| | ||| |||||||| |||||||    
T  30708108 taacttatatattttttattaaatatataactttttaatggataattgttgttttcaaataaa-acttgatatttttagttacttt 30708024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 33987304 - 33987244
Alignment:
Q  96 atatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaatt 156  Q
    |||||||||| ||| |||||| | |||||||||||| |||||| | |||||| ||||||||    
T  33987304 atatatataattttctaataattgattgttgtttttaaataaaaaattgctagttttaatt 33987244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 9450396 - 9450274
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||||||||||||| || ||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  9450396 ttaaagtagtatgtttgtattggaatttgtgtattttctattaaatatataattttttaataaataattgttgtttttcaataaatagtttttattttta 9450297  T
Q  154 attactttaacatgtgcaatatt 176  Q
    | |||||||| ||||||||||||    
T  9450296 actactttaagatgtgcaatatt 9450274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 20566056 - 20566178
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||||||||||| |||||||||||||| ||| | ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  20566056 ttaaagtattatgtttgtattggaacttgtgtattttttattaaatagataatattttaataaataattgttgtttttcaataaatagttgctattttta 20566155  T
Q  154 attactttaacatgtgcaatatt 176  Q
     ||||||||||||||||||||||    
T  20566156 gttactttaacatgtgcaatatt 20566178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 34817676 - 34817561
Alignment:
Q  61 agtatgtttgtattgtaacttgtg-tattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattact 159  Q
    |||||||| |||||| |||||||| | |||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |    
T  34817676 agtatgttggtattggaacttgtgcttttttttattaaatatataactttttaataaataattgttg-ttttcaataaatagttgatatttttagttatt 34817578  T
Q  160 ttaacatgtgcaatatt 176  Q
    |||| | ||||||||||    
T  34817577 ttaatacgtgcaatatt 34817561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 15411661 - 15411783
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||| |||||  ||||| ||| |||||||  ||||| ||| | |||| || ||||||||||||| ||||||||||||||||||| | || ||| |||||    
T  15411661 ttaaaatagtaactttgtcttgaaacttgttcattttatattaaatatgtagctttttaataaattattgttgtttttcaataaaaaattactactttta 15411760  T
Q  154 attactttaacatgtgcaatatt 176  Q
     ||||||||||||||||||||||    
T  15411761 gttactttaacatgtgcaatatt 15411783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 23932690 - 23932582
Alignment:
Q  68 ttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatg 167  Q
    |||||| | |||||||| ||||| ||| |  |||| |||||||||||||||||||||| |||||||||  | |||| ||||||||| || ||||||||||    
T  23932690 ttgtatcggaacttgtgcattttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacatg 23932591  T
Q  168 tgcaatatt 176  Q
    |||||||||    
T  23932590 tgcaatatt 23932582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 34214034 - 34214132
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccct 196  Q
    |||||||||||||||  |||||||||||| ||||||||||| | || ||||||||| || |||||||||||||| ||||| |||| ||| |||| ||||    
T  34214034 atatataactttttataaaataattgttggttttcaataaaaacttactatttttagttgctttaacatgtgcagtattatacatgttagacaaaccct 34214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 25998093 - 25998161
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaata 174  Q
    ||||||||||||||||||||||||||||||||| ||||   | ||||| ||||||||||||||||||||    
T  25998093 ctttttaataaataattgttgtttttcaataaaaagttttcacttttagttactttaacatgtgcaata 25998161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 19228564 - 19228422
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| |||||    
T  19228564 ttaaagtagtaactttgacttggaacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttactactttta 19228466  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     |||| |||||||||||||||||  |||| ||| |||| |||||    
T  19228465 gttaccttaacatgtgcaatattgcacatgttagacaaaccctt 19228422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 43388857 - 43388948
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||||||||| ||||||||||| | || ||| ||||| || |||||| ||||||||||||  |||||||| |||| |||||    
T  43388857 ctttttaataaataattgttgattttcaataaaaaatttctacttttagttgctttaagatgtgcaatattgcacatattagacaaaccctt 43388948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 14377563 - 14377442
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| || |||||||||||| ||||||||||| |||| ||| |||||    
T  14377563 ttaaagtagtaactttgacttgaaacttgtgttttttatattaaatatgtaactttt-aacaaataattgttggttttcaataaaaagttactactttta 14377465  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || | |||||||||||||||||    
T  14377464 gttgccttaacatgtgcaatatt 14377442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 16919193 - 16919314
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| ||||||| ||| |||| ||| |||||    
T  16919193 ttaaagtagtaactttgacttgaaacttgtgttttttatattaaatatgtaactttt-aatcaataattgttggttttcaacaaaaagttactactttta 16919291  T
Q  154 attactttaacatgtgcaatatt 176  Q
     |||| |||||||||||||||||    
T  16919292 gttaccttaacatgtgcaatatt 16919314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 27665083 - 27665204
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || |||| ||| |||||    
T  27665083 ttaaagtagtaactttgacttggaacttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactactttta 27665181  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || | |||||||||||||||||    
T  27665182 gttgccttaacatgtgcaatatt 27665204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 40562160 - 40562238
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||| |||||||||||||||||| ||||||||||| | || ||  |||||| ||||||||||||| |||||||    
T  40562160 atatataactctttaataaataattgttgattttcaataaaaacttactgcttttaactactttaacatgtacaatatt 40562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 12016752 - 12016663
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  12016752 ttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 12016663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 2051722 - 2051630
Alignment:
Q  85 tattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    |||||| ||| | |||| ||| |||||||||||||||||||||||||||||||| | |||||| ||||| ||  |||||||| | ||||||||    
T  2051722 tattttatattaaatatttaaatttttaataaataattgttgtttttcaataaaaacttgctaattttagttgttttaacatatacaatatta 2051630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 9747456 - 9747341
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||| |||||  ||||| ||| |||||||  ||||| ||| | |||| || |||||| | ||||| ||||||||||||||||||||||| ||| |||||    
T  9747456 ttaaaatagtaattttgtcttggaacttgttcattttatattaaatatgtagcttttttacaaatagttgttgtttttcaataaatagttactactttta 9747357  T
Q  154 attactttaacatgtg 169  Q
     ||| |||||||||||    
T  9747356 gttaatttaacatgtg 9747341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 5583641 - 5583718
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||    
T  5583641 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatatt 5583718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 43806486 - 43806380
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||||||  ||||||||    
T  43806486 tttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttccaagaaaaagttactactattaattgttttaacat 43806387  T
Q  167 gtgcaat 173  Q
    |||||||    
T  43806386 gtgcaat 43806380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 39904140 - 39904208
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||    
T  39904140 ttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaatatt 39904208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 11660971 - 11661065
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattacttta 162  Q
    |||| |||| ||||||| |||||| ||| | || ||||||||||||||||||||||||| || ||||||||| | |||||| ||||| || |||||    
T  11660971 tttgcattggaacttgtatattttgtattaaatgtataactttttaataaataattgtt-ttattcaataaaaatttgctacttttagttgcttta 11661065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 16126651 - 16126746
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgtttta 203  Q
    ||||||| ||||||||||| |||||||| || | || ||| ||||| |||| |||||||||||||||||  |||| ||| |||| ||||| |||||    
T  16126651 ttttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaacccttttttta 16126746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 22705570 - 22705472
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| |||| ||| | |||| |||||||  ||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||    
T  22705570 aacttgtgttttttatattaaatatgtaacttta-aattaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatatt 22705472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 5853546 - 5853622
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat--aaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| | |  ||| |||||||| |||||||||||||||    
T  5853546 atatataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatgtgcaa 5853622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 7720204 - 7720135
Alignment:
Q  104 aactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  7720204 aacttttgaataaataattgttgtttttcaaaaaaaagttactactattagttgttttaacatgtgcaat 7720135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 16493615 - 16493691
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat--aaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| | |  ||| |||||||| |||||||||||||||    
T  16493615 atatataatttttaaataaataattgttgtttttcaataaaaacattaactacttttaattgctttaacatgtgcaa 16493691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 22704632 - 22704556
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat--aaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| | |  ||| |||||||| |||||||||||||||    
T  22704632 atatataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatgtgcaa 22704556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 24729664 - 24729725
Alignment:
Q  102 ataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaa 163  Q
    ||||||||||||||||||||| ||  ||||||||||| | || ||||||||| |||||||||    
T  24729664 ataactttttaataaataattatttattttcaataaaaatttactatttttagttactttaa 24729725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 25948134 - 25948058
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaata--gttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| |||| ||||||||||||||||||||||||||| |   |  ||| |||||||| |||||||||||||||    
T  25948134 atatataatttttaaataaataattgttgtttttcaataaaaacgctaactacttttaattgctttaacatgtgcaa 25948058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 45062314 - 45062225
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||||||| ||||| ||| | | || |||||||||||||||||||| |||||||| |||||| |||| | | ||||||||  ||||||||    
T  45062314 aacttgtgcattttatattaaacatgtaactttttaataaataatttttgttttttaataaaaagttaccacttttaattgttttaacat 45062225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 38248503 - 38248580
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    |||||||| |||||  ||||||||||||| |||| |||||| | |||||||||| | |||| ||||||||||||||||||    
T  38248503 atatataattttttgttaaataattgttggtttt-aataaaaacttgctatttt-agttaccttaacatgtgcaatatta 38248580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 40503064 - 40503135
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtg 169  Q
    ||||||||||||||  ||||||||||||| ||||||||||| | ||| || ||||||||  ||||| |||||    
T  40503064 atatataactttttgttaaataattgttggttttcaataaaaacttgttacttttaattgttttaatatgtg 40503135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 29795112 - 29795054
Alignment:
Q  139 tagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||| ||||||||| ||||||||||||  |||| ||| |||| |||||    
T  29795112 tagttgctatttttagttactttaatatgtgcaatattgcacatgttagacaaaccctt 29795054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 2544255 - 2544320
Alignment:
Q  60 tagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgtt 125  Q
    ||||| |||||||||  |||||||||||||| |||   || ||||| |||||||||||||||||||    
T  2544255 tagtaagtttgtattaaaacttgtgtattttatatttaatgtataattttttaataaataattgtt 2544320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 14285371 - 14285435
Alignment:
Q  111 taataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||| | |||||||||| | || ||| |||| ||||||||||||| |||||||||    
T  14285371 taataaataattgttttatttcaataaaaaatttctactttt-attactttaacatctgcaatatt 14285435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 15231947 - 15231886
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||| ||||  ||| | |||| |||||||||||||||||| | |||||||||||||||    
T  15231947 aacttgtgcatttcatattaaatatgtaactttttaataaataagttttgtttttcaataaa 15231886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 22162169 - 22162237
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||| ||||||||| ||| ||||||| |||| ||| ||||| || | |||||||||||||||||    
T  22162169 tttttaataattaattgttggttt-caataaaaagttactacttttagttgccttaacatgtgcaatatt 22162237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 26229946 - 26230034
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||| ||||||||||| |||| |||||| | || ||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  26229946 ttttaatcaataattgttggtttt-aataaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 26230034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 38327895 - 38327858
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagtt 143  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  38327895 ctttttaataaataattgttgattttcaataaaaagtt 38327858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 25068561 - 25068600
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  25068561 atatataattttttaataaataattgtt-tttttcaataaa 25068600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 35729256 - 35729188
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataatt 122  Q
    ||||||||| |  ||| ||||| |||||||||||||| ||  | |||||||| ||||||||||||||||    
T  35729256 ttaaagtagcaaatttatattggaacttgtgtattttatagtaaatatataaatttttaataaataatt 35729188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 39367150 - 39367114
Alignment:
Q  102 ataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  39367150 ataactttttaataaataattattgattttcaataaa 39367114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 16574 - 16692
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||||||  ||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||   |||||    
T  16574 ttaaagtaatatgtttgatttggaacttgtgtattttctatta-atatataaatttttaataaataattgttgttttccaataaatagttgccgctttta 16672  T
Q  154 attactttaacatgtgcaat 173  Q
     |||||||||||| ||||||    
T  16673 gttactttaacatatgcaat 16692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 12132122 - 12132003
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||||||||| |||||||||| ||||||   ||||| ||| | |||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||    
T  12132122 ttaaagtagtaagtttgtattggaacttgaacattttatattaaatatataactttttaataaatacttgtggtttttcaataaaaagttgctactttta 12132023  T
Q  154 attactttaacatgtgcaat 173  Q
     || ||||||||||||||||    
T  12132022 gtttctttaacatgtgcaat 12132003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 5573384 - 5573312
Alignment:
Q  97 tatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtg 169  Q
    |||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||| ||| |||||||||||    
T  5573384 tatatataactttttaataaatgattgttgtttttcaataaaaacttgttatttttagttattttaacatgtg 5573312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 7393296 - 7393363
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaa 134  Q
    ||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||    
T  7393296 tttgtcttgtaacttgtgtattttatattaaatatataactttttaataaataattggtgtttttcaa 7393363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 14816188 - 14816307
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||  ||| | |||| ||| |||||||||| ||||||||| ||||||||||| |||| ||| ||||| || |||||||||||||||||||    
T  14816188 aacttgtgtattta-tattaaatatgtaaatttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatatt 14816286  T
Q  177 agacatattaaacaacccctt 197  Q
      |||| ||| |||| |||||    
T  14816287 gcacatgttagacaaaccctt 14816307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 14829552 - 14829433
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||  ||| | |||| ||| |||||||||| ||||||||| ||||||||||| |||| ||| ||||| || |||||||||||||||||||    
T  14829552 aacttgtgtattta-tattaaatatgtaaatttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatatt 14829454  T
Q  177 agacatattaaacaacccctt 197  Q
      |||| ||| |||| |||||    
T  14829453 gcacatgttagacaaaccctt 14829433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 35678314 - 35678435
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||||||||  ||| | |||| ||| |||||||||| ||||||||| |||||||| || |||| ||| |||||    
T  35678314 ttaaagtagtaactttgacttgaaacttgtgtattta-tattaaatatgtaaatttttaataattaattgttggttttcaatgaaaagttactactttta 35678412  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || |||||||||||||||||||    
T  35678413 gtttctttaacatgtgcaatatt 35678435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 6818142 - 6818013
Alignment:
Q  68 ttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatg 167  Q
    |||||| | |||||||| ||||| ||| |  |||| |||||||||||||||||||||| |||||||||  | |||| ||||||||| || |||||||||     
T  6818142 ttgtatcggaacttgtgcattttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacata 6818043  T
Q  168 tgcaatattagacatattaaacaacccctt 197  Q
    | |||||||  |||| ||| |||| |||||    
T  6818042 tacaatattgcacatgttagacaaaccctt 6818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 7140550 - 7140619
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| ||||||||||| ||||||||||| |||| ||| ||||| |||| |||||||||||||||||    
T  7140550 tttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtgcaatatt 7140619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 8284660 - 8284728
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaata 174  Q
    |||||||||||||||||||| ||||| |||||| |||| ||| ||||| || |||||||||||||||||    
T  8284660 ctttttaataaataattgttcttttttaataaaaagttactacttttagttgctttaacatgtgcaata 8284728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 13496813 - 13496893
Alignment:
Q  97 tatatataactttttaataaataattgttgtttttcaataaatagttgcta-tttttaattactttaacatgtgcaatatt 176  Q
    |||||| |||||||||||||||||||||| |||||||||  | |||| ||| |||||| || |||||||||||||||||||    
T  13496813 tatataaaactttttaataaataattgttctttttcaatgtaaagttactattttttagttcctttaacatgtgcaatatt 13496893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 2161482 - 2161384
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  2161482 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 2161384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 3306126 - 3306236
Alignment:
Q  86 attttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatatt 185  Q
    ||||| ||||| ||||||||||||||  |||||||||||||  |||||||||| | || ||| ||||| |||| |||||||||||||||||  |||| ||    
T  3306126 attttgtatcaaatatataactttttgttaaataattgttg-gtttcaataaaaacttactacttttagttaccttaacatgtgcaatattgcacatgtt 3306224  T
Q  186 aaacaacccctt 197  Q
    | |||| |||||    
T  3306225 agacaaaccctt 3306236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 44222517 - 44222595
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    |||||||  ||||||||||||||||||||||||| |||||| || || || ||||| || ||||||||||||||||||||    
T  44222517 atatatacatttttaataaataattgttgttttt-aataaaaagatgttagttttagttgctttaacatgtgcaatatta 44222595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 9801763 - 9801686
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||| ||| ||||||||||| |||||||| || |||| ||| ||||||||||||||| |||| |||||||    
T  9801763 atatataactttt-aatcaataattgttgattttcaatgaaaagttactacttttaattactttaatatgtacaatatt 9801686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 20514760 - 20514650
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaaca 165  Q
    |||||| ||| |||||||  ||||| ||| | |||||||||||||||||||||||||| | |||||||||||  | || ||| ||| | || ||||| ||    
T  20514760 gtttgtcttggaacttgtacattttatattaaatatataactttttaataaataattggtatttttcaataagaaattactactttaagttgctttacca 20514661  T
Q  166 tgtgcaatatt 176  Q
    |||||||||||    
T  20514660 tgtgcaatatt 20514650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 33514592 - 33514661
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||  ||||||||||||||||||  ||||||| ||||| || | |||||||||||||||||    
T  33514592 tttttaataaatggttgttgtttttcaataaaaggttgctacttttagtttccttaacatgtgcaatatt 33514661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 9022177 - 9022099
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcat---atatataactttttaataaataattgttgttt 129  Q
    |||||||| ||| |||||||||||||||||| ||||| | | ||   ||||||||||||||||||||||||| ||||||    
T  9022177 ttaaagtaatatatttgtattgtaacttgtgcatttttttttattaaatatataactttttaataaataattattgttt 9022099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 34741716 - 34741802
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||  |||||||| ||||| ||| | |||||||| |||||||||||||||| ||| |||||||| || ||||| ||||||||    
T  34741716 gtttgtattagaacttgtgcattttatattaaatatataattttttaataaataattattg-ttttcaattaaaagttgttattttta 34741802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 9825049 - 9824976
Alignment:
Q  103 taactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| |||||| |||| |||||||||||||| |||| ||| |||||||| | ||||||| | |||||||    
T  9825049 taacttttttataaattattgatgtttttcaataaaaagttactaattttaattgcattaacatatacaatatt 9824976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 35583487 - 35583383
Alignment:
Q  72 attgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaat---agttgctatttttaattactttaacatgt 168  Q
    |||| |||||||||||||| ||| | |||||||| ||||||| |||||||||||| ||||||||||||   ||||| || |||||| |  ||||||||||    
T  35583487 attgaaacttgtgtattttgtattaaatatataa-tttttaacaaataattgttg-ttttcaataaataaaagttgtta-ttttaaatgttttaacatgt 35583391  T
Q  169 gcaatatt 176  Q
    ||||||||    
T  35583390 gcaatatt 35583383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 40226070 - 40226146
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat--aaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| | |  ||| |||||||| |||||||||||||||    
T  40226070 atatataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatgtgcaa 40226146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 10129189 - 10129121
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| |||||||| || | || ||| ||||| |||| |||||||||||||||||    
T  10129189 ttttaatcaataattgttggttttcaatgaaaaattactaattttagttaccttaacatgtgcaatatt 10129121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 12346098 - 12346030
Alignment:
Q  101 tataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtg 169  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||| ||| | ||||||  |||||||||||    
T  12346098 tataagttttgaataaataattgttgtttttcaagaaaaagttactactattaattgttttaacatgtg 12346030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 13328034 - 13328122
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||||| ||||||||||| |||||||| || |||| ||| ||||| |||| ||||||| |||||||||  |||| ||| |||| |||||    
T  13328034 tttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattgcacatgttagacaaaccctt 13328122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 26195495 - 26195530
Alignment:
Q  103 taactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26195495 taactttttaataaataattgatgtttttcaataaa 26195530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 26364076 - 26364150
Alignment:
Q  101 tataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||  ||||||||||||| |||| |||||| | || ||| ||||| |||| |||||||||||||||||    
T  26364076 tataactttttgttaaataattgttgatttt-aataaaaactttctacttttagttaccttaacatgtgcaatatt 26364150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 26682207 - 26682085
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat-aaatagttgctattttt 152  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| | || | || ||||||||||||||||||||| |||||||| ||| | || ||| ||||    
T  26682207 ttaaagtagtaactttgacttggaacttgtgcattttatattaaatgtgtagctttttaataaataattgttg-ttttcaataaaaaaattactactttt 26682109  T
Q  153 aattactttaacatgtgcaatatt 176  Q
    | ||  ||||||||||||||||||    
T  26682108 agttgttttaacatgtgcaatatt 26682085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 34869605 - 34869680
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| |||||||||||||||||||| || ||| |||| ||||| ||| ||  ||||||| |||||||    
T  34869605 atataaaacttttgaataaataattgttgtttttgaagaaaaagttactattattagttgttttaacacgtgcaat 34869680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 37264592 - 37264521
Alignment:
Q  102 ataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||||||||||||||||| ||| ||||||||||  | || ||| ||||| ||  |||||||||||||||    
T  37264592 ataactttttaataaataattattgattttcaataacaatttactacttttagttgttttaacatgtgcaat 37264521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 38843799 - 38843724
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  38843799 atataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacatgtgcaat 38843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 45006065 - 45005990
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  45006065 atataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacatgtgcaat 45005990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 15868052 - 15868098
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||| ||||||||||||||||||||| ||||| || |||||    
T  15868052 tttttaataagtaattgttgtttttcaataaaaagttgttactttta 15868098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 34249805 - 34249735
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataac-tttttaataaataattgttgtttttcaat 135  Q
    |||||| ||| |||||||||||||| ||| | |||| |||| ||||||||||||||||  |||||||||||    
T  34249805 gtttgtcttggaacttgtgtattttatattaaatatttaacttttttaataaataattagtgtttttcaat 34249735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 39701842 - 39701963
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| || |||||| |||| ||| | |||| |||||||| ||| | ||||||||| |||||||  || |||| ||| |||||    
T  39701842 ttaaagtagtaactttgacttgaaatttgtgttttttatattaaatatgtaactttt-aattagtaattgttggttttcaacgaaaagttactactttta 39701940  T
Q  154 attactttaacatgtgcaatatt 176  Q
     |||| |||||||||||||||||    
T  39701941 gttaccttaacatgtgcaatatt 39701963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 4080476 - 4080569
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||| ||| |||||| ||| ||||||||  |||||||| || |||| ||| ||||| || | |||||||||||||||||| |||| ||| ||||    
T  4080476 atatgtaaatttttagtaattaattgttagttttcaatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaa 4080569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 4084625 - 4084718
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||| ||| |||||| ||| ||||||||  |||||||| || |||| ||| ||||| || | |||||||||||||||||| |||| ||| ||||    
T  4084625 atatgtaaatttttagtaattaattgttagttttcaatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaa 4084718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 4102932 - 4103025
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||| ||| |||||| ||| ||||||||  |||||||| || |||| ||| ||||| || | |||||||||||||||||| |||| ||| ||||    
T  4102932 atatgtaaatttttagtaattaattgttagttttcaatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaa 4103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 38048029 - 38048090
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    ||||||||||||||||| ||||| | ||| || |||| ||||||||| |||||||| |||||    
T  38048029 tttttaataaataattggtgtttgtgaatgaaaagttactatttttagttactttagcatgt 38048090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 6850669 - 6850705
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagtt 143  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  6850669 ttttgaataaataattgttgtttttcaataaaaagtt 6850705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 7750733 - 7750685
Alignment:
Q  128 ttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||| |||||||| ||||| ||  ||||||||||||||||||    
T  7750733 ttttcaataaaaagttgctacttttagttgttttaacatgtgcaatatt 7750685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 9580201 - 9580285
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  ||||||||||||||| ||  |||||||| ||||    
T  9580201 ttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacatgtgcaatgttgcacatattagacaa 9580285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 9744000 - 9743917
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||||||  ||||  ||| ||||| ||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||||||    
T  9744000 ttaaagtagtaactttgacttggaacttatgttttttatattaaatatgtaactttt-aataaataattgttggttttcaataaa 9743917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 10974637 - 10974705
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||| ||| ||||||||||||| || |||||||||||||||  ||| ||| ||||| || |||||||||    
T  10974637 atatgtaattttttaataaatagttattgtttttcaataaaatgttactacttttagttgctttaacat 10974705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 19343937 - 19343997
Alignment:
Q  116 aataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||| |||||||| || |||| ||| ||||  |||| |||||||||||||||||    
T  19343937 aataattgttggttttcaatgaaaagttactacttttggttaccttaacatgtgcaatatt 19343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 40210914 - 40211002
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||||| ||||||||||| |||||||| || ||||  || ||||| |||| ||||||| |||||||||  |||| ||| |||| |||||    
T  40210914 tttaatcaataattgttggttttcaatgaaaagttaatacttttagttaccttaacatatgcaatattgcacatgttagacaaaccctt 40211002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 7040291 - 7040409
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||||||  ||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||   |||||    
T  7040291 ttaaagtactatgtttgatttggaacttgtgtattttctatta-atatataaatttttaataaataattgttgttttccaataaatagttgccgctttta 7040389  T
Q  154 attactttaacatgtgcaat 173  Q
     |||||||||||| ||||||    
T  7040390 gttactttaacatatgcaat 7040409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 3530159 - 3530275
Alignment:
Q  60 tagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattact 159  Q
    ||||| |||| ||||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| | ||  |||| |||||| ||    
T  3530159 tagtaagtttttattgaaatttgtgcattttatatcaaatatataattttttaataaataattgttg-ttttcaataaaaaattattattcttaattgct 3530257  T
Q  160 ttaacatgtgcaatatta 177  Q
    ||||||||||| ||||||    
T  3530258 ttaacatgtgcgatatta 3530275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 19868241 - 19868131
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaaca 165  Q
    |||||| ||| |||||||||||||| ||| | |||||||||||||| ||||||||||| ||||||||||| || | || ||| ||||| ||   ||||||    
T  19868241 gtttgtcttgaaacttgtgtattttatattaaatatataactttttgataaataattggtgtttttcaatgaaaatttactacttttagttgtcttaaca 19868142  T
Q  166 tgtgcaatatt 176  Q
    |||||||||||    
T  19868141 tgtgcaatatt 19868131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 8091395 - 8091470
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||||| || |||| |||||||||||    
T  8091395 atatataactttttaataaataattattgattttcaataaaaatttgctacttttagttgctttgacatgtgcaat 8091470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 19889479 - 19889337
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || |||| ||| |||||    
T  19889479 ttaaagtagtaactttgacttggaacttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactactttta 19889381  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | |||||||||||||||||  |||| ||| |||| |||||    
T  19889380 gttgccttaacatgtgcaatattgcacatgttagacaaaccctt 19889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 33343127 - 33342985
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||| |||||  ||||||||| ||||||   ||||| ||| | ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| |||||    
T  33343127 ttaaaatagtaactttgtattggaacttgaacattttgtattaaatatataactttttgttaaataattgttggttt-caataaaaacttgctactttta 33343029  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     |||| |||||||||||||||||  |||| ||| |||| |||||    
T  33343028 gttaccttaacatgtgcaatattgcacatgttagacaaaccctt 33342985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 31066800 - 31066894
Alignment:
Q  80 ttgtgtattttctatcatatatataactttt-taataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||||||| ||||| |||||||| |||| ||||||||| || |||||||| |||||| |||| ||| ||||| ||| |||||||||||||||    
T  31066800 ttgtgtattttatatcaaatatataatttttttaataaatagttcttgttttttaataaaaagttactacttttacttattttaacatgtgcaat 31066894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 39869218 - 39869140
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||| ||| |||||||||| ||||||||| |||||||| || |||| ||||||||| || |||||||||||||||||||    
T  39869218 atatgtaaatttttaataattaattgttggttttcaatgaaaagttactatttttagtttctttaacatgtgcaatatt 39869140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 2276806 - 2276733
Alignment:
Q  62 gtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    ||||| |||| ||| |||||||||||||| ||| | ||| |||||||||||||||||||||| |||||||||||    
T  2276806 gtatgcttgtgttgaaacttgtgtattttatattaaatagataactttttaataaataattggtgtttttcaat 2276733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 11680101 - 11680176
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat--aaatagttgctatttttaattactttaacatgtgca 171  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||| || | || |||||||||    
T  11680101 atatataactttttaataaataattgttgtttttcaattaaaaaagttgctattcttatttgcctttacatgtgca 11680176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 42750378 - 42750291
Alignment:
Q  103 taactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||||||||||||||||||| ||||||| ||||||| ||||  |||||||| || ||||||||| |||||||||  |||| ||||||||    
T  42750378 taactttttaataaataattattgtttt-caataaaaagttattatttttagttgctttaacatatgcaatattgcacatgttaaacaa 42750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 9332046 - 9331952
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgtttta 203  Q
    |||||| ||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||  |||| ||| |||| ||||| |||||    
T  9332046 tttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaacccttttttta 9331952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 12085993 - 12086106
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||  || |||| ||| ||||| || | |||||||||||||||||    
T  12085993 aacttgtgttttttatattaaatatttaactttt-aataaataattgttgattttcaacgaaaagttactacttttagttgccttaacatgtgcaatatt 12086091  T
Q  177 agacatattaaacaa 191  Q
    | |||| ||| ||||    
T  12086092 acacatgttagacaa 12086106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 38554333 - 38554263
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    |||||||| ||||||||| |||||||||||||||||||||| | || | ||||||| ||| ||||||||||    
T  38554333 atatataaatttttaatatataattgttgtttttcaataaaaatttacgatttttagttagtttaacatgt 38554263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 24639628 - 24639564
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgca 171  Q
    |||||||| |||||||||||||| |||||||| |  | | |||||||||||||||||||||||||    
T  24639628 tttttaatgaataattgttgtttgtcaataaaaaaattccatttttaattactttaacatgtgca 24639564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 47707967 - 47708007
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  47707967 atatataactttttaataaataattgttgtttttccataaa 47708007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 7170141 - 7169999
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| |  ||| ||  |||||||||| ||||||||| ||| ||||||| |||| |||||||||    
T  7170141 ttaaagtagtaactttgacttggaacttgtgcattttatattaattatgtagatttttaataattaattgttggttt-caataaaaagttactattttta 7170043  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | |||||||||||||||||  |||| ||| |||| |||||    
T  7170042 gttgccttaacatgtgcaatattgcacatgttagacaatccctt 7169999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 36991041 - 36991116
Alignment:
Q  56 aaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgttttt 131  Q
    |||||||||| ||||||    |||||||||||||||||| | |||||| ||||||||||||||| ||||| |||||    
T  36991041 aaagtagtatatttgtagcaaaacttgtgtattttctattaaatatatgactttttaataaatagttgttattttt 36991116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 46290105 - 46290031
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| ||||||||||||||    
T  46290105 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaat 46290031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 5909321 - 5909442
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| || ||||| ||||||||||||||| |||||||| || |||| ||  |||||    
T  5909321 ttaaagtagtaactttgacttgaaacttgtgttttttatattaaatatgtagctttt-aataaataattgttggttttcaatgaaaagttactgctttta 5909419  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || | |||||||||||||||||    
T  5909420 gttgccttaacatgtgcaatatt 5909442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 23982794 - 23982908
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||||||||| ||| | |||| ||| |||||||||| ||||||||| |||| ||| || |||| ||| |||||    
T  23982794 ttaaagtagtaactttgacttggaacttgtgtattttatattaaatatttaagtttttaataattaattgttggttttgaatgaaaagttactactttta 23982893  T
Q  154 attactttaacatgt 168  Q
     || | |||||||||    
T  23982894 gttgccttaacatgt 23982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 25709490 - 25709560
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||| |||||||||| |||||||| | || ||| ||||| ||  ||||||||||||||||||    
T  25709490 ctttttaataaattattgttgtttatcaataaaaaattactacttttagttgatttaacatgtgcaatatt 25709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 45501585 - 45501479
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| |||| || |||||||||||||||||||| || ||| |||| ||| | ||| ||| ||||||||    
T  45501585 tttgtattggaacttgtacatttaatattaaatataaaactgttgaataaataattgttgttttttaagaaaaagttactactattagttattttaacat 45501486  T
Q  167 gtgcaat 173  Q
    |||||||    
T  45501485 gtgcaat 45501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7899537 - 7899606
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    |||||| || |||||||| |||||| ||| | ||||||||| ||||||||||| |||| |||||||||||    
T  7899537 gtttgtcttataacttgtatattttatattaaatatataacattttaataaattattggtgtttttcaat 7899606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 12624753 - 12624692
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||||||||| ||| | ||||| || ||||||||||||||||| | ||||||||||||    
T  12624753 aacttgtgtattttatattaaatatacaagtttttaataaataattgatatttttcaataaa 12624692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 24699230 - 24699177
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttt 151  Q
    |||| ||||||| ||||||||||||||||||||||||| || |||| |||||||    
T  24699230 atatgtaactttataataaataattgttgtttttcaatgaaaagttactatttt 24699177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 12650914 - 12650838
Alignment:
Q  100 atataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||||||||||||| |  |||||||| || |||| ||||||||| ||   ||||||||| |||||||    
T  12650914 atataactttttaataaataattggtagttttcaatgaaaagttactatttttagttggcttaacatgtacaatatt 12650838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 24250399 - 24250331
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||| |||||||| || ||||  || ||||| || | |||||||||||||||||    
T  24250399 ttttaataaataattgttggttttcaatgaaaagttaatacttttagtttccttaacatgtgcaatatt 24250331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 39757202 - 39757270
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| |||||||| || | || ||| ||||| |||| |||||||||||||||||    
T  39757202 ttttaatcaataattgttgattttcaatgaaaaattactacttttagttaccttaacatgtgcaatatt 39757270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 47201326 - 47201258
Alignment:
Q  101 tataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtg 169  Q
    |||||||||||||||| | |||||||||||| |  ||| | |||||| |||||||| ||||||||||||    
T  47201326 tataactttttaataattgattgttgtttttaataaaaaaattgctacttttaattcctttaacatgtg 47201258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 16800578 - 16800636
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    |||||||||||||||||||||||||||||| || || || |||| ||| |||||||||||    
T  16800578 tttaataaataattgttgtttttcaataaaaagatgttactttt-atttctttaacatgt 16800636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 36548553 - 36548620
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||| ||||||||||| ||||||||||| | || ||| ||||| || | |||||||||||||||||    
T  36548553 tttaatcaataattgttggttttcaataaaaaattactacttttagttcccttaacatgtgcaatatt 36548620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 38760042 - 38759975
Alignment:
Q  99 tatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||| ||||||| ||||||||||||||||||||||| ||| |||| ||||| ||| ||  ||||||||    
T  38760042 tataaaacttttgaataaataattgttgtttttcaaaaaaaagttactattattagttgttttaacat 38759975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 8420894 - 8420956
Alignment:
Q  76 taacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||||| |||| ||| | ||||| |||||||||||||||||||| || |||| ||||||    
T  8420894 taacttgtgtcttttatattaaatatacaactttttaataaataattgatgctttttaataaa 8420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 3561970 - 3562067
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgttttatt 205  Q
    ||||||| ||||||| ||| |||||||| || |||| ||  ||||| |||| |||||||||||||||||  |||| ||| ||||  |||| |||||||    
T  3561970 ttttaatcaataattattgattttcaatgaaaagttactgcttttagttaccttaacatgtgcaatattgcacatgttagacaaatcctttttttatt 3562067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 6307641 - 6307523
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||||||  ||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||   |||||    
T  6307641 ttaaagtaatatgtttgatttggaacttgtgtattttctatta-atatataaatttttaataaataattgttgttttccaataaatagttgccgctttta 6307543  T
Q  154 attactttaacatgtgcaat 173  Q
     |||||||||||| ||||||    
T  6307542 gttactttaacatatgcaat 6307523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 36490874 - 36490796
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||||| |||||||||||||||||||    
T  36490874 atatataactttttaataaataattgttgtttttcaataaaaacttactacttttaattgctttaacatgtgcaatatt 36490796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 39627623 - 39627732
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||||||||||||||||| ||||| ||| | |||| |||||||| ||||| | |||||||||||||||| || |||||||||||||| || | |||||||    
T  39627623 tttgtattgtaacttgtgcattttatattaaatatgtaacttttcaataagtgattgttgtttttcaattaaaagttgctatttttagtttccttaacat 39627722  T
Q  167 gtgcaatatt 176  Q
    ||| ||||||    
T  39627723 gtgtaatatt 39627732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 11744917 - 11744985
Alignment:
Q  104 aactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaa 172  Q
    ||||||||||||||||||||||||||||||||||| ||||  || |||||||| |||||||||||||||    
T  11744917 aactttttaataaataattgttgtttttcaataaaaagtttatacttttaatttctttaacatgtgcaa 11744985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 49392220 - 49392132
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttg 144  Q
    |||||||||||||||||||||| ||| |||||||||  |||  || |||||  |||||||||||||| |||||||||||||||||||||||    
T  49392220 ttaaagtagtatgtttgtattgaaacatgtgtatttcttat--taaatatacttttttaataaataactgttgtttttcaataaatagttg 49392132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 23591824 - 23591718
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||| |||| |||||||  ||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||| | || ||| ||||| || |||||||||    
T  23591824 tttgcattggaacttgtacattttgtattaaatatataactttttaataaataattattgattttcaataaaaacttactaattttagttgctttaacat 23591725  T
Q  167 gtgcaat 173  Q
    |||||||    
T  23591724 gtgcaat 23591718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 25465253 - 25465176
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||| ||||||||| ||||||||||||||||| |||||||| |||||||| ||||| | ||||||||||||||||||||    
T  25465253 atatttaactttttgataaataattgttgtttctcaataaa-agttgctacttttagtgactttaacatgtgcaatatt 25465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 1502803 - 1502901
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||  ||||||||||||||||| ||||||| | |||||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  1502803 atatataactttttgttaaataattgttgtttt-caataaaaatttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 1502901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 9516698 - 9516639
Alignment:
Q  76 taacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||    
T  9516698 taacttgtgtattttatattaaatatataactttttaataaataattggtgtttttcaat 9516639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 39150366 - 39150508
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| || |||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || |||| ||| |||||    
T  39150366 ttaaagtagtaactttgacttggaatttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactactttta 39150464  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | |||||||||||||||||  |||| ||| |||| |||||    
T  39150465 gttgccttaacatgtgcaatattgcacatgttagacaaaccctt 39150508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 34050366 - 34050444
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| ||||| |||||||||||||||||||||||||  | ||| || ||||  || |||||||||||||||||||    
T  34050366 atatataattttttgataaataattgttgtttttcaataataatttgttacttttggttgctttaacatgtgcaatatt 34050444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 41624968 - 41624847
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| |  ||| ||  |||||||||| ||||||||| ||| ||||||| |||| |||||||||    
T  41624968 ttaaagtagtaactttgacttggaacttgtgcattttatattaattatgtagatttttaataattaattgttggttt-caataaaaagttactattttta 41624870  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || |||||||||||||||||||    
T  41624869 gttgctttaacatgtgcaatatt 41624847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 3121213 - 3121121
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    ||||||||||||||  |||||||||||||  |||||||||| | |||||| |||||||||| ||||||| || ||||||  |||||||| ||||    
T  3121213 atatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttaattaccttaacatatgtaatattgcacatattagacaa 3121121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 51613122 - 51613058
Alignment:
Q  101 tataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||| |||||||||||||||| |||||||| |||||||||| | |||||||| ||||||||||||    
T  51613122 tataaatttttaataaataattattgttttt-aataaatagtcgttatttttagttactttaacat 51613058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 8062291 - 8062207
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||||||| ||||||||||| |||||||| || |||| ||| ||||| |||| ||||||||| |||||||  |||| ||||||||    
T  8062291 tttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgttcaatattgcacatgttaaacaa 8062207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 44918110 - 44918042
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| ||||||||||| | || ||| ||||| |||| |||||||||||||||||    
T  44918110 ttttaatcaataattgttgattttcaataaaaatttactacttttagttaccttaacatgtgcaatatt 44918042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 6520806 - 6520708
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||| ||| |||||||||||||||||||||||||||| ||| ||||| || ||||| || ||||||| |||| ||||||  |||| ||| |||| |||||    
T  6520806 atatttaattttttaataaataattgttgtttttcaagaaa-agttgttacttttagtttctttaacctgtgtaatattgtacatgttagacaaaccctt 6520708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 6754610 - 6754468
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| |  ||| ||  |||||||||| ||||||||| ||| ||||||| |||| |||||||||    
T  6754610 ttaaagtagtaactttgacttggaacttgtgcattttatattaattatgtagatttttaataattaattgttggttt-caataaaaagttactattttta 6754512  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | |||||||||||||||||  |||| ||| |||| |||||    
T  6754511 gttgccttaacatgtgcaatattgcacatgttagacaatccctt 6754468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 17919592 - 17919450
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| || |||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || |||| ||| |||||    
T  17919592 ttaaagtagtaactttgacttggaatttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactactttta 17919494  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | ||||||||| |||||||  |||| ||| |||| |||||    
T  17919493 gttgccttaacatgtacaatattgcacatgttagacaaaccctt 17919450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 19277878 - 19277843
Alignment:
Q  103 taactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  19277878 taactttttaataaataattgttgtttttcaataaa 19277843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 30363057 - 30363152
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaa 172  Q
    |||||||| ||||| ||| | |||| ||  |||||||||| ||||||||| ||||||||||| |||| ||||||||| |  | |||||||||||||    
T  30363057 aacttgtgcattttatattaaatatgtaggtttttaataattaattgttggttttcaataaaaagttactatttttagtagccttaacatgtgcaa 30363152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 35438828 - 35438773
Alignment:
Q  80 ttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||||    
T  35438828 ttgtgtattttatattaaatatataactttttaataaacaattggtgtttttcaat 35438773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 40799350 - 40799429
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatatta 186  Q
    |||||||||||||||| || |||||||||||| ||||  || ||||| || || ||||||||||||||||  ||||||||    
T  40799350 tttttaataaataatttttatttttcaataaaaagttcatacttttagttgctctaacatgtgcaatattgcacatatta 40799429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 7520080 - 7520158
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| ||||||||||||| | || ||||| |||||| | || ||| ||||| || |||||||||||||||||||    
T  7520080 atatataacattttaataaataagtattattttttaataaaaatttactacttttagttgctttaacatgtgcaatatt 7520158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 23576497 - 23576574
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | ||| || ||||| |||| |||||||||||||||||    
T  23576497 atatataactttttgttaaataattgttggttt-caataaaaacttgttacttttagttaccttaacatgtgcaatatt 23576574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 25956744 - 25956666
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| ||||  |||| ||| ||  ||||| ||||||||||||    
T  25956744 atataaaacttttaaataaataattgttgtttttcaagaaaaagttattattattagttgttttaatatgtgcaatatt 25956666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 30109089 - 30109159
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    ||||| ||||||||||||||||||||||||||||  ||| | | |||||| ||||| || |||||||||||    
T  30109089 atatacaactttttaataaataattgttgttttttcatataaaattgctacttttagtttctttaacatgt 30109159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 33048177 - 33048235
Alignment:
Q  80 ttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||| |||||| ||| | |||||||||||||||||||||||||||| ||||| ||||||    
T  33048177 ttgtatattttatattaaatatataactttttaataaataattgttattttttaataaa 33048235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 32543142 - 32543211
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||| |||||||||| |  ||||| |||| |||||||||| || |||| ||||    
T  32543142 tttttaataaataattgttgtctttcaataaaaaaatgctactttttattactttaaaatatgcagtatt 32543211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 43317575 - 43317507
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||| ||||||||||| ||| |||||||| ||| ||||| || ||||||||||| |||||||    
T  43317575 tttttaataaatgattgttgtttt-caaaaaatagttactacttttagttgctttaacatgtacaatatt 43317507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 47355430 - 47355538
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||| ||| |   ||||| |||||| |||| ||||||||||||| ||||||| ||||  || ||||| || |||||||||    
T  47355430 tttgtattggaacttgttcattttatattaatgatatacctttttgataagtaattgttgtttt-caataaaaagtttatacttttagttgctttaacat 47355528  T
Q  167 gtgcaatatt 176  Q
    ||||||||||    
T  47355529 gtgcaatatt 47355538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 51382450 - 51382389
Alignment:
Q  115 aaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||    
T  51382450 aaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatatt 51382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 313835 - 313767
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| |||||||| || | || ||| ||||| |||| |||||||||||||||||    
T  313835 ttttaatcaataattgttggttttcaatcaaaaattactacttttagttaccttaacatgtgcaatatt 313767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 13241876 - 13241816
Alignment:
Q  74 tgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaa 134  Q
    ||||||||||||||||  ||| | |||||||| ||||||||||||||||  ||||||||||    
T  13241876 tgtaacttgtgtatttcatattaaatatataattttttaataaataatttgtgtttttcaa 13241816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 5858084 - 5857991
Alignment:
Q  98 atatataactttttaataaataatt-gttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||||||||||||||||||||||||  |||||||| |||||| ||||| || ||||||||  ||||| ||||  ||||||  |||| ||||||||    
T  5858084 atatataactttttaataaataattacttgttttt-aataaaaagttgttacttttaattgttttaatatgtcaaatattgcacatgttaaacaa 5857991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 22167421 - 22167355
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    |||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  22167421 ttttgaataaataattgttgtttttcaagaaaaagttactactattagttgttttaacatgtgcaat 22167355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 51920514 - 51920584
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| | || ||| | ||||||  ||||||||||    
T  51920514 atataaaacttttgaataaataattgttgtttttcaaaaaaaaattactactattaattgttttaacatgt 51920584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 22331704 - 22331643
Alignment:
Q  112 aataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||||||||||||||||||||| ||| |||| ||| | |||  || |||||||||||||||    
T  22331704 aataaataattgttgtttttcaagaaaaagttactactattagatattttaacatgtgcaat 22331643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 38539196 - 38539104
Alignment:
Q  83 tgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||| |||||| | ||| ||||||||||||||| |||||| |||||| ||||  | ||||||||  |||| || | |||||||||||||||||    
T  38539196 tgtatattctataaaatagataactttttaataa-taattggtgttttccaatgcaaagttgctacatttagtttccttaacatgtgcaatatt 38539104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 38561414 - 38561322
Alignment:
Q  83 tgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||| |||||| | ||| ||||||||||||||| |||||| |||||| ||||  | ||||||||  |||| || | |||||||||||||||||    
T  38561414 tgtatattctataaaatagataactttttaataa-taattggtgttttccaatgcaaagttgctacatttagtttccttaacatgtgcaatatt 38561322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 52337887 - 52337834
Alignment:
Q  72 attgtaacttgtgtattttctatcatatatataactttttaataaataattgtt 125  Q
    |||| ||||| |||||||| ||| | |||||||| |||||||||||||||||||    
T  52337887 attgcaacttatgtattttatattaaatatataaatttttaataaataattgtt 52337834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 2222326 - 2222358
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||| |||||||||||||||    
T  2222326 ctttttaataaataattattgtttttcaataaa 2222358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 26978174 - 26978110
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgttttt 131  Q
    ||||||||| ||||||| |||||  ||| | ||||| || |||| ||||||||||||||||||||    
T  26978174 tttgtattgaaacttgtatatttaatattaaatataaaatttttgaataaataattgttgttttt 26978110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 35941106 - 35941138
Alignment:
Q  99 tatataactttttaataaataattgttgttttt 131  Q
    |||||||||||||||||||||| ||||||||||    
T  35941106 tatataactttttaataaataaatgttgttttt 35941138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 2096998 - 2096888
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaaca 165  Q
    |||||||||| |||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||  | ||||| ||  ||||||     
T  2096998 gtttgtattggaacttgtgcattttatattaaatatataactttttaataaataattgttgtttttcaataaaaagttgtcacttttagttgatttaact 2096899  T
Q  166 tgtgcaatatt 176  Q
    |||||||||||    
T  2096898 tgtgcaatatt 2096888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 34941373 - 34941280
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| || ||||| |||| |||| ||||||||||||| |||| ||| ||||    
T  34941373 atatataactttttaataaatagttgttgtttttcaataaaaagttgttacttttagttaccttaatatgtgcaatattacacatgttagacaa 34941280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 49181198 - 49181089
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||||||||||||||||| ||||| ||| | |||| |||||||| ||||||| |||||||||||||||| ||  ||||||| ||||| || | |||||||    
T  49181198 tttgtattgtaacttgtgcattttatattaaatatgtaacttttcaataaatgattgttgtttttcaattaaaggttgctacttttagtttccttaacat 49181099  T
Q  167 gtgcaatatt 176  Q
    ||||||||||    
T  49181098 gtgcaatatt 49181089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 52391424 - 52391294
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||| ||||||||    
T  52391424 tttgtattggaacttgtacatttaatattaaatataaaacttttgaataaataattgttgtttttcaaaaaaaagttactactattagttattttaacat 52391325  T
Q  167 gtgcaatattagacatattaaacaacccctt 197  Q
    |||||| |||| |||||||| |||| |||||    
T  52391324 gtgcaacattacacatattagacaaaccctt 52391294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 42480005 - 42480083
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||||||||||||||| ||||||||||||||  ||||||| | ||| || |||||| ||||||||||||    
T  42480005 atatataactttttaataaataattgatgtttttcaataaaatgttgctactcttagttgctttaagatgtgcaatatt 42480083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 51070447 - 51070516
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    |||||| |||||||||||||||||| ||| | ||||||||||||||||||||| |||| |||||||||||    
T  51070447 gtttgttttgtaacttgtgtattttatattaaatatataactttttaataaatgattggtgtttttcaat 51070516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 6875617 - 6875518
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||| ||| | || |||||||||| |||||||||||| | |||| |||||||   || ||||||||| ||  ||||||||||||||||||    
T  6875617 aacttgtgtattttatattaaatttataacttttcaataaataattgatattttccaataaaatattactatttttagttgttttaacatgtgcaatatt 6875518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 9759225 - 9759302
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||    
T  9759225 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatatt 9759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 19450952 - 19451082
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  ||||||||    
T  19450952 tttgtattggaacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacat 19451051  T
Q  167 gtgcaatattagacatattaaacaacccctt 197  Q
    ||||||| ||  |||| ||| ||||||||||    
T  19451052 gtgcaatgttgcacatgttagacaacccctt 19451082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 37784916 - 37784998
Alignment:
Q  71 tattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||| ||||| ||||| | | | |||| |||||||||||||||| ||| ||||||||||||||| |||||||| |||||    
T  37784916 tattgtaatttgtgcattttatgttaaatatgtaactttttaataaatgattattgtttttcaataaaaagttgctactttta 37784998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 39876937 - 39876848
Alignment:
Q  86 attttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||| ||||| ||||||||||||||  |||||||||||||  |||||||||| | || ||| ||||| |||| |||||||||||||||||    
T  39876937 attttgtatcaaatatataactttttgttaaataattgttg-gtttcaataaaaacttactacttttagttaccttaacatgtgcaatatt 39876848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 50352397 - 50352320
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||    
T  50352397 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatatt 50352320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 35645084 - 35645163
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat---aaatagttgctatttttaattactttaacatgtgcaata 174  Q
    |||||||||||||||||||||||||||| |||||||||   ||| |||||||| ||||| || ||||||| | |||||||    
T  35645084 atatataactttttaataaataattgttatttttcaataaaaaaaagttgctacttttagtttctttaacgtatgcaata 35645163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 54506463 - 54506556
Alignment:
Q  60 tagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||| ||||| |||| ||| ||| |||||| ||| | ||||| || ||||||| |||| ||||||||| ||||||||||| ||||||||||||    
T  54506463 tagtaagtttgcattgaaacatgtatattttgtattaaatatacaattttttaacaaatgattgttgttcttcaataaatacttgctattttta 54506556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 36000032 - 36000100
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| ||||| |||| ||||||||| |||||||    
T  36000032 ttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtacaatatt 36000100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 38222412 - 38222304
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||  || ||||| ||||| ||| | |||||||| |||||||||||||||||||| |||||| |||| | ||| || ||||| || |||||||||    
T  38222412 tttgtattaaaatttgtggattttatattaaatatataattttttaataaataattgttgattttcactaaaaatttgttacttttagttcctttaacat 38222313  T
Q  167 gtgcaatat 175  Q
     | ||||||    
T  38222312 atacaatat 38222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 53376493 - 53376574
Alignment:
Q  99 tatataactttttaataaataattgttgtttttcaat----aaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||||||||| ||||||||||||||||    ||| ||  |||||||||| ||  ||||||||||||||||||    
T  53376493 tatataactttttaataaatgattgttgtttttcaataaaaaaaaagaagctatttttagttcttttaacatgtgcaatatt 53376574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 49332425 - 49332350
Alignment:
Q  101 tataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||||  | ||||||||| || ||||  || |||||||||| |||||||||| ||||||    
T  49332425 tataactttttaataaataattaatatttttcaatgaaaagttattacttttaattaccttaacatgtgaaatatt 49332350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 55813959 - 55813920
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataa 137  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  55813959 atatataactttttaataaataattgttgattttcaataa 55813920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 16667446 - 16667504
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    |||||||||||||| ||| | |||| || ||||||||||||||| ||||||||||||||    
T  16667446 aacttgtgtattttatattaaatatgtagctttttaataaataagtgttgtttttcaat 16667504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 19468320 - 19468214
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  ||||||||    
T  19468320 tttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacat 19468221  T
Q  167 gtgcaat 173  Q
    |||||||    
T  19468220 gtgcaat 19468214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 23553657 - 23553587
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatag-ttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| ||||||||||| ||||||||||| |  || ||||||||| |||| |||||||||||||||||    
T  23553657 tttttaatcaataattgttggttttcaataaaaaaattactatttttagttaccttaacatgtgcaatatt 23553587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 27019386 - 27019280
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  ||||||||    
T  27019386 tttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacat 27019287  T
Q  167 gtgcaat 173  Q
    |||||||    
T  27019286 gtgcaat 27019280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 27756700 - 27756579
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    ||||||||| | |||||| ||| ||||||| |||| | ||| | ||| ||||||||||||| |||||||| |||||| ||||  | ||||||||  ||||    
T  27756700 ttaaagtagcaagtttgtcttgaaacttgtatattctatattaaatagataactttttaat-aataattggtgttttccaatgcaaagttgctacattta 27756602  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || | |||||||||||||||||    
T  27756601 gtttccttaacatgtgcaatatt 27756579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 51691467 - 51691362
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    |||| |||| ||||||| ||||||  || | ||||||| ||||||||||||||||| ||  ||||||||||| | || ||| ||||| || |||||||||    
T  51691467 tttgcattggaacttgtatattttgaattaaatatatagctttttaataaataattattagttttcaataaagacttacta-ttttagttgctttaacat 51691369  T
Q  167 gtgcaat 173  Q
    |||||||    
T  51691368 gtgcaat 51691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 24993548 - 24993617
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||| ||||||||||||||||||| | | | | |||||| ||  ||||||||||||||||||    
T  24993548 tttttaataaatgattgttgtttttcaataaaaaatcgttttttttagttcatttaacatgtgcaatatt 24993617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 25843405 - 25843316
Alignment:
Q  80 ttgtgtattttctatcatatatataa-ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgt 168  Q
    ||||| ||||| ||| | |||||||| |||||||| ||||  |||||||||||||||||| |||| ||| ||||| || |||||||||||    
T  25843405 ttgtgcattttatattaaatatataagctttttaacaaatggttgttgtttttcaataaaaagttactacttttagttgctttaacatgt 25843316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 27298986 - 27298949
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaat 135  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27298986 atatataactttttaataaataattggtgtttttcaat 27298949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 4779519 - 4779559
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  4779519 atatataatttttaaataaataattgttgtttttcaataaa 4779559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 7349804 - 7349706
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| |||| ||| | |||| |||||||| || |||||||||||| |||||||| || ||||  || ||||| || | |||||||||||||||||    
T  7349804 aacttgtgttttttatattaaatatgtaactttt-aacaaataattgttggttttcaatgaaaagttattacttttagttgccttaacatgtgcaatatt 7349706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 10389330 - 10389428
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || ||||  || ||||| ||||| ||||||||| ||||||    
T  10389330 aacttgtgttttttatatgaaatatgtaactttt-aatcaataattgttggttttcaattaaaagttaatacttttagttactataacatgtgtaatatt 10389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 16069299 - 16069330
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||||||||||||||||||||||||||    
T  16069299 tttttaataaataattgttgtttttcaataaa 16069330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 23545571 - 23545496
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| | || ||| | ||| ||  |||||||||||||||    
T  23545571 atataaaacttttgaataaataattgttgtttttcaagaaaaaattactactattagttgttttaacatgtgcaat 23545496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 24297467 - 24297392
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| | || ||| | ||||||  |||||||| ||||||    
T  24297467 atataaaacttttaaataaataattgttgtttttcaaaaaaaaattactactattaattgttttaacatatgcaat 24297392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 29190909 - 29190988
Alignment:
Q  109 tttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaa 188  Q
    |||||| ||||||||||| |||||||| || | || ||| ||||| |||| ||||||| |||||||||  ||||||||||    
T  29190909 tttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatatgcaatattgcacatattaaa 29190988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 17409910 - 17409844
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    |||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  17409910 ttttgaataaataattgttgtttttcaagaaaaagttactactattagttgttttaacatgtgcaat 17409844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 33559314 - 33559264
Alignment:
Q  80 ttgtgtattttctatcatatatataactttttaataaataattgttgtttt 130  Q
    ||||||||||| ||| | |||||||| ||||||||||||||||||| ||||    
T  33559314 ttgtgtattttatattaaatatataattttttaataaataattgttttttt 33559264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 40049653 - 40049576
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| |||||  ||||||||||||| ||| | ||||| | || ||| ||||| ||||||||||||||||||||||    
T  40049653 atatataattttttgttaaataattgttggttt-ctataaaaacttactacttttagttactttaacatgtgcaatatt 40049576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 33632285 - 33632330
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagtt 143  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  33632285 atataaaacttttgaataaataattgttgtttttcaaaaaaaagtt 33632330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 44571568 - 44571664
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttt 151  Q
    |||||||||||  ||||||||  ||||| |  ||||| ||| | |||||||| |||||||||| ||||| |||||||| |||||| ||||| ||||||    
T  44571568 ttaaagtagtagatttgtatttgaacttatacattttatattaaatatataaatttttaataagtaattattgttttt-aataaaaagttgatatttt 44571664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 8736893 - 8736933
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  8736893 atatgtaactttttaataaataagttttgtttttcaataaa 8736933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 10813587 - 10813655
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||| |||||||||||| ||||||||||| ||||  || ||||| || | ||||||| |||||||||    
T  10813587 ttttaacaaataattgttggttttcaataaaaagttattacttttagttgccttaacatatgcaatatt 10813655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 46492382 - 46492523
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  |||| |||| |||||||  ||||| ||| | ||||||||||  ||||||||||||||||||||||||||||| | || | | |||||    
T  46492382 ttaaagtagtaactttgcattgaaacttgtacattttgtattaaatatataactcgttaataaataattgttgtttttcaataaaaacttaccactttta 46492481  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccc 195  Q
     || |||||||||||||||||||  |||| ||||||||||||    
T  46492482 gttgctttaacatgtgcaatattgcacattttaaacaacccc 46492523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 15862986 - 15863066
Alignment:
Q  96 atatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||| |||||||||||||| |||||||||  | |||||||| |||||||| || ||||||||||||||||    
T  15862986 atatatataacttttaaataaataattgttctttttcaatgtaaagttgctacttttaattcctgtaacatgtgcaatatt 15863066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 49396446 - 49396368
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||||||||| |||||||||| || | ||| |||||||| || ||||||||| |||||||||    
T  49396446 atatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttagttcctttaacatatgcaatatt 49396368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 37055419 - 37055548
Alignment:
Q  68 ttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatg 167  Q
    |||||| | ||||||||| |||| ||| |  |||| |||||||||||||||||||||| |||||||||  | |||| ||||||||| || |||||||||     
T  37055419 ttgtatcggaacttgtgttttttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacata 37055518  T
Q  168 tgcaatattagacatattaaacaacccctt 197  Q
    |||||||||  |||| ||| |||| |||||    
T  37055519 tgcaatattgtacatgttagacaaaccctt 37055548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 11611053 - 11610911
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || |||| ||| |||||    
T  11611053 ttaaagtagtaactttgacttggaacttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactactttta 11610955  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     || | |||||||||||||||||  |||| ||| |||| |||||    
T  11610954 gttgccttaacatgtgcaatattgcacatgttagacaaaccctt 11610911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 53794859 - 53794780
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    |||| |||||||||||||||| ||||||  ||||||||||||||||  |||||||| ||  |||||||||||||||||||    
T  53794859 atatgtaactttttaataaattattgttacttttcaataaatagttattatttttagttggtttaacatgtgcaatatta 53794780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 13495433 - 13495315
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| | |||| ||  |||||||||||||||||||| ||||||||||| | || ||| |||||    
T  13495433 ttaaagtagtaattttgacttggaacttgtgcattttatattaaatatgtaggtttttaataaataattgttgattttcaataaaaaattactactttta 13495334  T
Q  154 attactttaacatgtgcaa 172  Q
     |||| |||||||||||||    
T  13495333 gttaccttaacatgtgcaa 13495315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 14847041 - 14847140
Alignment:
Q  56 aaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaat 155  Q
    ||||||||| ||||||||||||||||||||||||| |||   |||||||| |||| ||||||||||| |||  |||||||||| | ||| ||||||||||    
T  14847041 aaagtagtaagtttgtattgtaacttgtgtattttatattgaatatataaattttaaataaataattattg-gtttcaataaaaaattg-tatttttaat 14847138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 46845531 - 46845616
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    ||||||||||||||||||||| ||||||||||| | || ||| ||||| || |||||| ||||||||||||  |||||||| ||||    
T  46845531 ctttttaataaataattgttgattttcaataaaaaatttctacttttagttgctttaagatgtgcaatattgcacatattagacaa 46845616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 23320196 - 23320125
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||| ||| |||| ||||||||| ||| | ||||||| |||||||||||||||||| ||||||||||||||    
T  23320196 tttgtcttgaaactcgtgtattttatattaaatatatatctttttaataaataattgatgtttttcaataaa 23320125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 32321776 - 32321903
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| ||| |||||||||  ||| | |||||||| ||||  |||||| ||| ||||||||||||||| ||||| |||||||| ||  ||||||||    
T  32321776 tttgtattgaaacatgtgtatttcatattaaatatataattttt--ataaatgatttttgtttttcaataaa-agttgatatttttagttcttttaacat 32321872  T
Q  167 gtgcaatattagacatattaaacaacccctt 197  Q
     |||||||||| |||| ||| |||| |||||    
T  32321873 atgcaatattacacatgttatacaaaccctt 32321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 2571363 - 2571286
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||    
T  2571363 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatatt 2571286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 12515557 - 12515634
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| |||| |||||| | |||||| ||||| |||| |||||||||||||||||    
T  12515557 atatataactttttgttaaataattgttggtttt-aataaaaacttgctacttttagttaccttaacatgtgcaatatt 12515634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 30472935 - 30473028
Alignment:
Q  60 tagtatgtttgtattgtaacttgtgtattttctatcatatatataactttt-taataaataattgttgtttttcaataaatagttgctattttt 152  Q
    ||||| ||||||||| ||||||||||||||| ||| | || |||| ||||| |||||||| |||||||||||| |||||| | ||| |||||||    
T  30472935 tagtaagtttgtattataacttgtgtattttatattaaatgtatatcttttttaataaatgattgttgtttttaaataaaaaattgttattttt 30473028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 7940918 - 7940854
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgttttt 131  Q
    ||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||||  |||||||    
T  7940918 tttgtcttgtaacttctgtattttatattaaatatataactttttaataaataattagtgttttt 7940854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 51339276 - 51339344
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| ||||||||||| |||||||| || | || ||||||||| |||| |||||||||||||||||    
T  51339276 ttttaatcaataattgttggttttcaatgaaaaattactatttttagttaccttaacatgtgcaatatt 51339344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 51618135 - 51618067
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||||||||||||||||||||| |||| | |||||  ||||| ||  ||||||||||||||||||    
T  51618135 ttttaataaataattgttgtttttcagtaaaaacttgctgcttttagttgttttaacatgtgcaatatt 51618067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 9711035 - 9710964
Alignment:
Q  102 ataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    |||| |||||||| ||||||||||||||||||||||| | || ||| ||||| ||  |||||||||||||||    
T  9711035 ataaatttttaattaataattgttgtttttcaataaaaacttactagttttagttgttttaacatgtgcaat 9710964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 23638111 - 23638170
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaata 136  Q
    |||||||||||||| ||| | ||||| ||||||||| |||||||||| ||||||||||||    
T  23638111 aacttgtgtattttatattaaatatacaactttttattaaataattgatgtttttcaata 23638170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 10307861 - 10307784
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| ||| |||||||||||||    
T  10307861 atatataactttttgttaaataattgttggttt-caataaaaatttgctacttttagttaccttatcatgtgcaatatt 10307784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 53718388 - 53718322
Alignment:
Q  111 taataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatta 177  Q
    |||||||||||| |||||||| |||||| | ||||||  ||||||  ||||||||||||||||||||    
T  53718388 taataaataattattgttttttaataaaaacttgctacatttaatctctttaacatgtgcaatatta 53718322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 54527758 - 54527864
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||| |||||||  ||||  ||| | ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  ||||||||    
T  54527758 tttgtattggaacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttccaagaaaaagttactactattagttgttttaacat 54527857  T
Q  167 gtgcaat 173  Q
    |||||||    
T  54527858 gtgcaat 54527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 20938143 - 20938074
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| ||||||||||  ||||||||||| ||||  || ||||| |||| |||||||||||||||||    
T  20938143 tttttaatcaataattgttagttttcaataaaaagttattacttttagttaccttaacatgtgcaatatt 20938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 24569325 - 24569398
Alignment:
Q  103 taactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||| |||||||||||||| ||||  ||||| || ||   ||||||||| |||||||    
T  24569325 taactttttaataaataattgatgtttttcaataaaaagttattatttgtagttgtcttaacatgtccaatatt 24569398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 53537075 - 53537128
Alignment:
Q  99 tatataactttttaataaataattgttgtttttcaataaatagttgctattttt 152  Q
    |||| ||||||||||||||||||||||||||||||||  | |||| ||||||||    
T  53537075 tataaaactttttaataaataattgttgtttttcaatgtaaagttactattttt 53537128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 23803098 - 23803174
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagtt 143  Q
    |||| |||| ||||||| |||||  ||| | ||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  23803098 tttgcattggaacttgtatatttcatattaaatataaaacttttgaataaataattgttgtttttcaagaaaaagtt 23803174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 33474556 - 33474596
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  33474556 atatataatttttaaataaataattgttgtttttcaataaa 33474596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 47387015 - 47386939
Alignment:
Q  101 tataactttttaataaataattg-ttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||||||||||| || |||||||||||| | || ||| ||||| || |||||| ||| ||||||||    
T  47387015 tataactttttaataaataattgtttttttttcaataaaaacttactacttttagttgctttaatatgcgcaatatt 47386939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 50364329 - 50364210
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| |  |||| ||| |||||    
T  50364329 ttaaagtagtaactttgacttggaacttgtgttttttatattaaatatgtaactttt-aatcaataattgttggttttcaattataagttactactttta 50364231  T
Q  154 attactttaacatgtgcaata 174  Q
     |||| || ||||||||||||    
T  50364230 gttacctttacatgtgcaata 50364210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 1569242 - 1569313
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||| |||||||  ||||| ||| | |||| ||||||| |||||||| |||||||||||| ||||||    
T  1569242 tttgtattggaacttgttcattttatattagatatgtaactttctaataaattattgttgttttttaataaa 1569313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 7220232 - 7220173
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaata 136  Q
    |||||||||||||  ||| | ||||||| ||||||| ||||||||| |||||||||||||    
T  7220232 aacttgtgtatttgatattaaatatatatctttttagtaaataattattgtttttcaata 7220173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 37444232 - 37444134
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgttttattt 206  Q
    |||||||||| ||||||||| ||| ||||||| |||| ||| ||||| || | |||||||||||||||||  |||| ||| |||| ||||| || |||||    
T  37444232 tttttaataattaattgttgattt-caataaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaatcccttattatattt 37444134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 51567869 - 51567932
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttt 130  Q
    ||||||||| |||||||  |||| |||| | ||||| ||||||| |||||||||||||||||||    
T  51567869 tttgtattgaaacttgtacatttactattaaatataaaacttttgaataaataattgttgtttt 51567932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 35414892 - 35414930
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaata 136  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  35414892 atatataacttttgaacaaataattgttgtttttcaata 35414930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 54320719 - 54320807
Alignment:
Q  53 attaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagtt 143  Q
    ||||||||||||||| | ||||| || |||||| |||| ||| | |||||||| ||||||| ||||||||| || ||||||||||| ||||    
T  54320719 attaaagtagtatgtatatattgaaatttgtgtgttttatatta-atatataattttttaaaaaataattg-tggttttcaataaaaagtt 54320807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 2379134 - 2379230
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||| |||||| |||   |||||| ||||||||||||||||   ||||| ||||||||| | || ||| ||||| ||  ||||||||||||||||||    
T  2379134 aacttgtatattttgtatttaatatatgactttttaataaataa---ttgttattcaataaaaacttactacttttagttgttttaacatgtgcaatatt 2379230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 3863415 - 3863326
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||| |||||||| || |||||||| || |||| |||  |||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  3863415 ttttaatcaataattgctgattttcaatgaaaagttactacctttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 3863326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 3215009 - 3214977
Alignment:
Q  106 ctttttaataaataattgttgtttttcaataaa 138  Q
    |||||||||||||||||||||||| ||||||||    
T  3215009 ctttttaataaataattgttgtttgtcaataaa 3214977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 26486439 - 26486487
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgtt 125  Q
    |||||||||||||| ||| | |||||||  |||||||||||||||||||    
T  26486439 aacttgtgtattttatattaaatatatagttttttaataaataattgtt 26486487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 38389563 - 38389467
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    |||||||| ||||  ||| | |||| || ||||||||||||||| | ||||||||||||||| | || ||| |||||  ||  ||||||||||||||    
T  38389563 aacttgtgcatttcatattaaatatgtagctttttaataaataagttttgtttttcaataaaaaattactacttttagatatcttaacatgtgcaat 38389467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 39248546 - 39248510
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaa 134  Q
    |||||||| |||||||||||||||| |||||||||||    
T  39248546 atatataattttttaataaataatttttgtttttcaa 39248510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 18041 - 18153
Alignment:
Q  60 tagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattact 159  Q
    |||||||||||||||| || ||||  ||||| ||| | |||||||||||| ||||||||||||||||||||| ||| || |||| ||| |||||||| ||    
T  18041 tagtatgtttgtattggaatttgtacattttatattaaatatataactttctaataaataattgttgttttttaattaagagttactacttttaattcct 18140  T
Q  160 ttaacatgtgcaa 172  Q
    |||||| ||||||    
T  18141 ttaacacgtgcaa 18153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 17844 - 17911
Alignment:
Q  71 tattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||| |||||||  ||||| ||| | | |||||| ||||||||||||||||||| ||||||||||||    
T  17844 tattggaacttgtacattttgtattaaagatataaatttttaataaataattgttatttttcaataaa 17911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 39990088 - 39990198
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaaca 165  Q
    |||||| ||| |||||||| ||||||||| | |||||    |||||| || ||||||||||||||||||||||||||||||||||||| |||| | ||||    
T  39990088 gtttgtcttgaaacttgtgcattttctattaaatataactttttttattagataattgttgtttttcaataaatagttgctatttttagttacatcaaca 39990187  T
Q  166 tgtgcaatatt 176  Q
    |||| ||||||    
T  39990188 tgtgtaatatt 39990198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 2795662 - 2795520
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| |||||    
T  2795662 ttaaagtagtaactttgacttggaacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttactactttta 2795564  T
Q  154 attactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
     |||| |||||||||||||||||  |||| ||| |||| |||||    
T  2795563 gttaccttaacatgtgcaatattgcacatgttagacaaaccctt 2795520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 28629993 - 28629896
Alignment:
Q  78 acttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| |||| ||| | |||| |||||||| ||||||||||||||| |||||||| || ||||  |||||||| || |||||||||||||||||||    
T  28629993 acttgtgttttttatattaaatatgtaactttt-aataaataattgttggttttcaatgaaaagttattatttttagttgctttaacatgtgcaatatt 28629896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 40166406 - 40166337
Alignment:
Q  69 tgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||| |||||||  ||||| ||| | |||||||||||||| ||||||||||||||||||||||||||    
T  40166406 tgtattgaaacttgtacattttgtattaaatatataactttttgataaataattgttgtttttcaataaa 40166337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 11636827 - 11636728
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||| ||| |||||||||| ||||||||| |||||||| || |||| ||| ||||| || |||||||||||||||||||  |||| ||| |||| |||||    
T  11636827 atatgtaaatttttaataattaattgttggttttcaatgaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaaccctt 11636728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 36597674 - 36597576
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||  |||| ||| |||| |||||    
T  36597674 atatataactttttgttaaataattgttggttt-caataaaaatttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccctt 36597576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 11250042 - 11250143
Alignment:
Q  100 atataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaaccccttgt 199  Q
    |||||| || ||| |||||||||||||||| ||| |||| | |||||| ||||| || |||||||||||||||||||  |||| |||||||| ||||| |    
T  11250042 atataatttattactaaataattgttgtttatcattaaa-acttgctacttttagttgctttaacatgtgcaatattgcacatgttaaacaaaccctttt 11250140  T
Q  200 ttt 202  Q
    |||    
T  11250141 ttt 11250143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 30839876 - 30839799
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||  ||||||||||||| ||| ||||||| | |||||| ||||| |||| |||||||||||||||||    
T  30839876 atatataactttttgttaaataattgttggttt-caataaaaacttgctacttttagttaccttaacatgtgcaatatt 30839799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 35469693 - 35469575
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat-aaatagttgctattttt 152  Q
    ||||| ||||| | || ||||| |||| || |||||| ||| | ||||||||||||||  ||| | |||||||||||||||| ||| | |||||| ||||    
T  35469693 ttaaaatagtaagcttttattggaactagtttattttatattaaatatataactttttcttaattgattgttgtttttcaataaaaaaattgctactttt 35469594  T
Q  153 aattactttaacatgtgca 171  Q
    | |||||||||||||||||    
T  35469593 agttactttaacatgtgca 35469575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 9184294 - 9184210
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaa 191  Q
    |||||||| ||||||| ||| |||||||| || |||| ||| ||||| |||| |||||||||||||||||| |||| ||| ||||    
T  9184294 tttttaatcaataattattggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattacacatgttagacaa 9184210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 11376045 - 11375977
Alignment:
Q  108 ttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||||||||||||| ||| |||||||| || |||| ||| ||||| || |||||||||||||||||||    
T  11376045 ttttaataaataattattgattttcaatgaaaagttactacttttagttgctttaacatgtgcaatatt 11375977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 15241002 - 15241070
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaat 135  Q
    ||||||||| || ||||| || || ||| | |||||||| |||||||||||||||||||||||||||||    
T  15241002 tttgtattgaaatttgtgcatgttatattaaatatataattttttaataaataattgttgtttttcaat 15241070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 11264687 - 11264644
Alignment:
Q  100 atataactttttaataaataattgttgtttttcaataaatagtt 143  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  11264687 atataactttttaataaataattgttctttttcaataaaaagtt 11264644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 15837401 - 15837330
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||| |||||||| ||||| ||| | |||||  || ||||||||||||||| |||||||||||||||    
T  15837401 tttgtattgaaacttgtgcattttatattaaatataatacattttaataaataattattgtttttcaataaa 15837330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 40513059 - 40512969
Alignment:
Q  85 tattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||| ||||| ||||||||||||||  |||||||||||||  |||||||||| | || ||| || || |||| |||||||||||||||||    
T  40513059 tattttgtatcaaatatataactttttgttaaataattgttg-atttcaataaaaacttactacttctagttaccttaacatgtgcaatatt 40512969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 8103619 - 8103740
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| |||||||| ||||| ||| |  ||| ||  |||||||||| ||||||||| ||| ||||||| |||| |||||||||    
T  8103619 ttaaagtagtaactttgacttggaacttgtgcattttatattaattatgtagatttttaataattaattgttggttt-caataaaaagttactattttta 8103717  T
Q  154 attactttaacatgtgcaatatt 176  Q
     || | |||||||||||||||||    
T  8103718 gttgccttaacatgtgcaatatt 8103740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 26265096 - 26265162
Alignment:
Q  67 tttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttca 133  Q
    ||||||||| ||||||| |||||  ||| | ||||| ||||||| ||||||||||||||||||||||    
T  26265096 tttgtattgaaacttgtatatttaatattaaatataaaacttttaaataaataattgttgtttttca 26265162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 18150530 - 18150469
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||| |||||| ||| | ||||||||| |||||||||||||||| |||| |||||||||    
T  18150530 aacttgtatattttgtattaaatatataacattttaataaataattggtgttattcaataaa 18150469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 6863651 - 6863584
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacat 166  Q
    ||||||||||||||| |||||||||||||  |||||||||| | |||||| ||||| |||| |||||||    
T  6863651 atatataactttttattaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacat 6863584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 10665016 - 10665131
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaaca 165  Q
    |||||| ||| ||||||||||||   ||| | || ||||||||||||||||||||||  | |||| |||| || ||||  || ||||| |||| ||||||    
T  10665016 gtttgtcttggaacttgtgtattgcatattaaatttataactttttaataaataattaatatttt-caatgaaaagttattacttttagttaccttaaca 10665114  T
Q  166 tgtgcaatattagacat 182  Q
    |||||||||||| ||||    
T  10665115 tgtgcaatattacacat 10665131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 5958206 - 5958305
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatattagacatattaaacaacccctt 197  Q
    |||| ||| |||||||||| ||||||||| |||||||| || | || ||| ||||| || |||||||||||| ||||||  |||| ||| |||| |||||    
T  5958206 atatgtaaatttttaataattaattgttgattttcaatgaaaaattactacttttagtttctttaacatgtgtaatattgcacatgttagacaaaccctt 5958305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 18841788 - 18841863
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    ||||| ||||||| ||||||||||||||||||| ||| ||| |||| ||| | ||| ||  |||||||||||||||    
T  18841788 atataaaacttttgaataaataattgttgttttccaaaaaaaagttactactattagttgttttaacatgtgcaat 18841863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 38994126 - 38994216
Alignment:
Q  66 gtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaa-taaatagttgctatttttaatt 156  Q
    |||||||||| || |||| |||||| ||  | ||||||||||||| |||||||||||||| | |||||| |||| | |||||||||||||||    
T  38994126 gtttgtattgaaatttgtatattttatagtaaatatataactttt-aataaataattgttatatttcaattaaaaaattgctatttttaatt 38994216  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 1203103 - 1203136
Alignment:
Q  98 atatataactttttaataaataattgttgttttt 131  Q
    ||||||||||||||||||| ||||||||||||||    
T  1203103 atatataactttttaataagtaattgttgttttt 1203136  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 15820333 - 15820281
Alignment:
Q  86 attttctatcatatatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||||| | |||||  || ||||||||||||||| |||||||||||||||    
T  15820333 attttctattaaatataataccttttaataaataattattgtttttcaataaa 15820281  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 31567583 - 31567635
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatagttgctatttttaattact 159  Q
    |||||||| ||||||| ||||||||||||||| |||| || |||||| |||||    
T  31567583 tttttaatgaataattattgtttttcaataaaaagttactctttttagttact 31567635  T

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Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 52818 - 52939
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| |||||    
T  52818 ttaaagtagtaactttgacttggaacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttactactttta 52916  T
Q  154 attactttaacatgtgcaatatt 176  Q
     |||| |||||||||||||||||    
T  52917 gttaccttaacatgtgcaatatt 52939  T

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Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 145816 - 145695
Alignment:
Q  54 ttaaagtagtatgtttgtattgtaacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctattttta 153  Q
    |||||||||||  ||||  ||| ||||||||| |||| ||| | |||| |||||||| ||| ||||||||||| |||||||| || |||| ||| |||||    
T  145816 ttaaagtagtaactttgacttggaacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttactactttta 145718  T
Q  154 attactttaacatgtgcaatatt 176  Q
     |||| |||||||||||||||||    
T  145717 gttaccttaacatgtgcaatatt 145695  T

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Target: scaffold0727 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 5778 - 5708
Alignment:
Q  107 tttttaataaataattgttgtttttcaataaatag-ttgctatttttaattactttaacatgtgcaatatt 176  Q
    |||||||| ||||||||||| ||||||||||| |  || ||||||||| |||| |||||||||||||||||    
T  5778 tttttaatcaataattgttggttttcaataaaaaaattactatttttagttaccttaacatgtgcaatatt 5708  T

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Target: scaffold0149 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 22559 - 22519
Alignment:
Q  98 atatataactttttaataaataattgttgtttttcaataaa 138  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  22559 atatatagctttttaataaataattgatgtttttcaataaa 22519  T

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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 41059 - 40997
Alignment:
Q  114 taaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaatatt 176  Q
    ||||| ||||||||||||||| ||| ||||| || |||||||| ||||||  |||||||||||    
T  41059 taaatgattgttgtttttcaaaaaaaagttgttacttttaatttctttaagttgtgcaatatt 40997  T

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Target: scaffold0111; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 37176 - 37272
Alignment:
Q  77 aacttgtgtattttctatcatatatataactttttaataaataattgttgtttttcaataaatagttgctatttttaattactttaacatgtgcaat 173  Q
    |||||||| ||||  ||| | |||| || ||||||||||||||| | ||||||||||||||| | || ||| |||||  ||  ||||||||||||||    
T  37176 aacttgtgcatttcatattaaatatgtagctttttaataaataagttttgtttttcaataaaaaattactacttttagatatcttaacatgtgcaat 37272  T

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