View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_26 (Length: 294)
Name: NF3030_high_26
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 12508199 - 12507915
Alignment:
| Q |
7 |
taccaaatctatttactgaaattaagtaccctgcttaaattgcttatcatatgtttttgtaaaaagaagaaaatgaatatgatgaatttttcgccgttaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12508199 |
taccgaatctatttactgaaattaagtaccctgcttaaattgcttatcatatgtttttgtaaaaagaagaaaatgaatatgatgaatttt-cgccgttaa |
12508101 |
T |
|
| Q |
107 |
attgaaagtgaattttcaatttaactgaagaaaatgaatttttgccgttcaaatgtcatttctctactcgtaaatattcacggatacatcaaaatatatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12508100 |
attgaaagtgaattttcaatttaactgaagaaaatgaattttcgctgttcaaatgtcatttctctactcgtaaatactcgcggatacatcaaaatatatt |
12508001 |
T |
|
| Q |
207 |
gattatctgtttagaggatgctcgcacaatatgatatagacacatataccatatatattcgacaggacggacacaaattatcatatt |
293 |
Q |
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| T |
12508000 |
gattatctgtttaga-gatactcgcacaatatgatatagacacatataccatatatattcgacaggacggacacaaattatcatatt |
12507915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 12376997 - 12376956
Alignment:
| Q |
56 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
97 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||| |
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| T |
12376997 |
tatgttttggtaaaaagaagaaaatgaatatgatgaactttt |
12376956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 32537102 - 32537143
Alignment:
| Q |
56 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
97 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
32537102 |
tatgttttggtaaaaagaagaaaatgaatatgatgaattttt |
32537143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2513866 - 2513830
Alignment:
| Q |
60 |
tttttgtaaaaagaagaaaatgaatatgatgaatttt |
96 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2513866 |
tttttgtaaaaagaagaaaatgaatgtgatgaatttt |
2513830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 27865751 - 27865791
Alignment:
| Q |
57 |
atgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
97 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
27865751 |
atgttttggtaaaaagaataaaatgaatatgatgaattttt |
27865791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 24253407 - 24253443
Alignment:
| Q |
60 |
tttttgtaaaaagaagaaaatgaatatgatgaatttt |
96 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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|
| T |
24253407 |
ttttagtaaaaagaagaaaatgaatatgatgaatttt |
24253443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 24913192 - 24913151
Alignment:
| Q |
56 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
97 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||| |
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|
| T |
24913192 |
tatgattttgtaaaaagaagaaaatgaatgtgatgaactttt |
24913151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 25366281 - 25366322
Alignment:
| Q |
56 |
tatgtttttgtaaaaagaagaaaatgaatatgatgaattttt |
97 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
25366281 |
tatgttttggtaaaaagaagaaaatgaatgtgatgaactttt |
25366322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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