View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_27 (Length: 292)

Name: NF3030_high_27
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_27
NF3030_high_27
[»] chr2 (21 HSPs)
chr2 (15-292)||(10474875-10475151)
chr2 (15-292)||(10489098-10489383)
chr2 (123-292)||(10493173-10493339)
chr2 (176-290)||(7478278-7478392)
chr2 (118-242)||(10507777-10507901)
chr2 (175-292)||(7481877-7481994)
chr2 (15-93)||(10507937-10508015)
chr2 (15-93)||(10493378-10493456)
chr2 (15-95)||(10849928-10850008)
chr2 (10-93)||(7481705-7481788)
chr2 (117-205)||(10463766-10463853)
chr2 (15-93)||(7478124-7478202)
chr2 (170-213)||(10545466-10545509)
chr2 (23-93)||(10545592-10545662)
chr2 (10-93)||(28102274-28102357)
chr2 (15-93)||(10518821-10518899)
chr2 (10-93)||(27968462-27968545)
chr2 (10-93)||(28092042-28092125)
chr2 (15-93)||(10463877-10463955)
chr2 (136-223)||(10863259-10863352)
chr2 (168-222)||(28102432-28102486)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 10475151 - 10474875
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtgggaacaatgtcnnnnnnnnnn 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  10475151 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtgggaacaatgtctttctttttt 10475052  T
Q  115 nncatcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttca 214  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  10475051 t-catcgcagttttgcatactaattatttggttttacgtttagcatagatgtgtcctatgtttttgttttgataaatagtttatcaacatattgtcttca 10474953  T
Q  215 agtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtcattttctaatgg 292  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10474952 agtgttgaggatgttgaagtttgagcatcctaaacgtgtctcaactaaaaatagcacatacatgtcattttctaatgg 10474875  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 10489383 - 10489098
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg----ggaacaatgtcnnnnnn 110  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||| |||||||    | |||||||||          
T  10489383 ctgtgtccgaggtggacgataaacttgctgaagctttcaatggtgacaagcctatatcagcagctgatcttcaggtgtgttgagtaacaatgtcttttct 10489284  T
Q  111 nnnnnn----catcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatat 206  Q
              ||||| ||||| |||| |||||||||||| ||||| ||||||  |||| ||  |||||||||||||||||||||||||||||||||||||    
T  10489283 tttcttttttcatcggagtttggcatgctaattatttggctttacatttagcgaagatttcaaatatgtttttgttttgacaaatagtttatcaacatat 10489184  T
Q  207 tgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtcattttctaatgg 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  10489183 tgtcttaaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaaaagcacatacatgtccttttgtaatgg 10489098  T

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Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 292
Target Start/End: Complemental strand, 10493339 - 10493173
Alignment:
Q  123 agttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagtgttga 222  Q
    |||||||||| |  ||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||   |||    
T  10493339 agttttgcatgcatattatttggttttacatttagcaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaag---tga 10493243  T
Q  223 ggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtcattttctaatgg 292  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  10493242 ggatgttgaagtttgaacttcctaaatgtgtctcaactaaaaaaagcacatacatttcattttgtaatgg 10493173  T

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Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 7478278 - 7478392
Alignment:
Q  176 ttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatac 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  7478278 ttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtgtcaactaaaaacagcacatac 7478377  T
Q  276 atgtcattttctaat 290  Q
    ||||| |||| ||||    
T  7478378 atgtccttttgtaat 7478392  T

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Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 10507901 - 10507777
Alignment:
Q  118 atcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagt 217  Q
    |||| ||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||    
T  10507901 atcggagttttgcatactaattattttgttttacatttagcaaagatttctcatatgtttttgttttaacaaatagtttatcaacatattgtcttgaggt 10507802  T
Q  218 gttgaggatgttgaagtttgagcat 242  Q
    || ||||||||||||||||||||||    
T  10507801 gtagaggatgttgaagtttgagcat 10507777  T

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Target: chr2; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 175 - 292
Target Start/End: Original strand, 7481877 - 7481994
Alignment:
Q  175 tttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacata 274  Q
    |||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  7481877 tttttgttttgacaaataatttatcaacatattgtcttgacgtgttgaggatgttgaagtttgagcttcctaaatgtgtctcaactaaaaaaagcacata 7481976  T
Q  275 catgtcattttctaatgg 292  Q
    | | | ||||| ||||||    
T  7481977 cgtattattttgtaatgg 7481994  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 10508015 - 10507937
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  10508015 ctgtgtccgaggttgacgataaacttgctgaagctttcggtggtgacaagcccatatcagcagctgatcttgaggtgtg 10507937  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 10493456 - 10493378
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||||||||||||||||||||||||||| |||||||| ||  ||||||| |||||||||||||||||||||||||||||    
T  10493456 ctgtgtccgaggtggacgataaacttgctgaagcttttagcagtgacaatcccatctcagcagctgatcttgaggtgtg 10493378  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 10850008 - 10849928
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtggg 95  Q
    ||||||| |||||||||||||||||||| ||||||||  |  ||||||||||||| |||||| ||||||||||||||||||    
T  10850008 ctgtgtctgaggtggacgataaacttgctgaagcttttcgctgtgacaagcccatatcagcacctgatcttgaggtgtggg 10849928  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 7481705 - 7481788
Alignment:
Q  10 agaacctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||| ||||| ||||||  |||||||||||||| |||||||| ||  ||||||||||||||||||| |||||||||||||||||    
T  7481705 agaaactgtgcccgaggctgacgataaacttgctgaagcttttagcagtgacaagcccatctcagccgctgatcttgaggtgtg 7481788  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 10463853 - 10463766
Alignment:
Q  117 catcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacata 205  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || | | ||  |||||||||||||||| |||||||||||||||||    
T  10463853 catcgcactttttcatactaattatttggttttacatttagcaaag-tttttctcatgtttttgttttgactaatagtttatcaacata 10463766  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 7478124 - 7478202
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    ||||||||||||||||| |||||||||| ||||||||  |  |||||||| ||| ||||| ||||||||||||||||||    
T  7478124 ctgtgtccgaggtggacaataaacttgctgaagctttttgcagtgacaagtccaactcagtagctgatcttgaggtgtg 7478202  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 10545509 - 10545466
Alignment:
Q  170 atatgtttttgttttgacaaatagtttatcaacatattgtcttc 213  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  10545509 atatgattttgttttgacaaatagtttatcaacatattgtcttc 10545466  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 10545662 - 10545592
Alignment:
Q  23 gaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    ||||| |||||||||||||| ||||||||  |  | ||||||||||| |||||||||||||||||||||||    
T  10545662 gaggtagacgataaacttgctgaagctttttgcagcgacaagcccatttcagcagctgatcttgaggtgtg 10545592  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 28102274 - 28102357
Alignment:
Q  10 agaacctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||| |||||||  |||||||||| |||||||| ||||||||  |  |||| |||||||| |||||| ||||||||||||||||    
T  28102274 agaaactgtgtcaaaggtggacgaaaaacttgctgaagctttttgcagtgataagcccatatcagcaactgatcttgaggtgtg 28102357  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 10518899 - 10518821
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||||||||||||||||| ||||||||| ||||||||  |   || ||||||||| ||||| ||||||||| |||||||    
T  10518899 ctgtgtccgaggtggacggtaaacttgctgaagctttttgcattggcaagcccatatcagctgctgatcttaaggtgtg 10518821  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 27968545 - 27968462
Alignment:
Q  10 agaacctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||| |||||||  |||||||||| |||||||| ||||||||  |  | || |||||||| |||||| ||||||||||||||||    
T  27968545 agaaactgtgtcaaaggtggacgaaaaacttgctgaagctttttgcagcgataagcccatatcagcaactgatcttgaggtgtg 27968462  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 28092042 - 28092125
Alignment:
Q  10 agaacctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    |||| |||||||  |||||||||| |||||||| ||||||||  |  | || |||||||| |||||| ||||||||||||||||    
T  28092042 agaaactgtgtcaaaggtggacgaaaaacttgctgaagctttttgcagcgataagcccatatcagcaactgatcttgaggtgtg 28092125  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 10463955 - 10463877
Alignment:
Q  15 ctgtgtccgaggtggacgataaacttgcagaagctttcagtggtgacaagcccatctcagcagctgatcttgaggtgtg 93  Q
    ||||||| || ||||| ||||||||||| || |||||  |  ||| ||||||||| ||||||||||||||| |||||||    
T  10463955 ctgtgtcagacgtggatgataaacttgctgaggctttttgcagtggcaagcccatatcagcagctgatcttcaggtgtg 10463877  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 10863352 - 10863259
Alignment:
Q  136 aattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagttt------atcaacatattgtcttcaagtgttgag 223  Q
    |||||||||||||||  ||||||  |||| | ||||||||| |  ||||||||||||||||      |||||||||||||||| ||||||||||    
T  10863352 aattatttggttttatatttagcgaagatttgtcatatgttctacttttgacaaatagtttatcattatcaacatattgtcttaaagtgttgag 10863259  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 28102432 - 28102486
Alignment:
Q  168 tcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagtgttga 222  Q
    |||||||||||  || | | ||||||||||||||||||||||||| |||||||||    
T  28102432 tcatatgttttacttctaataaatagtttatcaacatattgtcttaaagtgttga 28102486  T

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