View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_3 (Length: 646)
Name: NF3030_high_3
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Original strand, 54656830 - 54657447
Alignment:
| Q |
16 |
catgaagatgattatatatttttagttgactataatgattgcgtcnnnnnnngaagagactatatatgaagacgagcaaacagttcacttgaaatgcatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54656830 |
catgaagatgattatatatttttagttgactataatgattgcgtcaaaaaaagaagagactatatatgaagacgagcaaacagttcacttgaaatgcatt |
54656929 |
T |
|
| Q |
116 |
actgtatttcacatggtggcatctcaatccagtccaaatgcacattccattacatgctaaatgtattaattattccaaaatttgtagttataagagccac |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54656930 |
a-----tttcacatggtggcatctcaatccagtccaaatgcacattccattacatgctaaatgtattaattattccaaaatttgtagttataagagccac |
54657024 |
T |
|
| Q |
216 |
actaactattgatcaactagctagcaaatctctgcatgtctacgagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacatct |
315 |
Q |
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|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54657025 |
actaactattgatcaagtaggtagcaaatctctgcatatctacgagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacttct |
54657124 |
T |
|
| Q |
316 |
gataagtttgcttcagcgatgaaaatgcaggaaatgtgcgtccatcaagaagctataattagtttgtgtttggttatgcagtaattaaaattagtttgat |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54657125 |
gataagtttgcttcagcgatgaaaatgtaggaaatgtgcgtccatcaagaagctgtaattagattgtgtttggttatgcagtaattaaaattagtttgat |
54657224 |
T |
|
| Q |
416 |
agaatcgagttaaaaagaactgattttgaataaaagtgaattgaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcgcagga |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54657225 |
agaatcgagttaaaaagaactgattttgaataaaagtgaatagaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcacagga |
54657324 |
T |
|
| Q |
516 |
gcaagatcaagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657325 |
gcaagatcaagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctc |
54657424 |
T |
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| Q |
616 |
attgtctcttgtgctgatgatgt |
638 |
Q |
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||||||||||||||| ||||||| |
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| T |
54657425 |
attgtctcttgtgcttatgatgt |
54657447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 607
Target Start/End: Original strand, 43733389 - 43733470
Alignment:
| Q |
526 |
gaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcac |
607 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
43733389 |
gaccgacctctggctgccatgattctttggagtttgtggaagagtcgttataccaagctttgggaggctacaaacacttcac |
43733470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 523 - 638
Target Start/End: Complemental strand, 28570860 - 28570745
Alignment:
| Q |
523 |
caagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtct |
622 |
Q |
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||||||||| |||| ||| |||| |||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| || ||| ||||||||| |
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| T |
28570860 |
caagaccgacctctggctaccatgattctttggagtctctagaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtct |
28570761 |
T |
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| Q |
623 |
cttgtgctgatgatgt |
638 |
Q |
| |
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||| |||| ||||||| |
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| T |
28570760 |
cttatgctcatgatgt |
28570745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 8041398 - 8041347
Alignment:
| Q |
409 |
gtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaattgaa |
460 |
Q |
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|||||||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
8041398 |
gtttgatagaattgagtttgagagaattgattttgaataaaagtgaattgaa |
8041347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 638
Target Start/End: Complemental strand, 29928997 - 29928897
Alignment:
| Q |
538 |
gctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgctgatgatg |
637 |
Q |
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|||||||| |||||||| ||||| |||||| || |||| || ||||||||| | |||| ||||||||| ||| ||||||||||| |||| |||||| |
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| T |
29928997 |
gctgccatgattctttgaagtttatggaagtgtcgtaacacgaagctttggaaagctagtgacacttcacccaccttcattgtctctcatgctcatgatg |
29928898 |
T |
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| Q |
638 |
t |
638 |
Q |
| |
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| |
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|
| T |
29928897 |
t |
29928897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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