View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_30 (Length: 288)
Name: NF3030_high_30
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 1684406 - 1684149
Alignment:
| Q |
18 |
caatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaa |
117 |
Q |
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| T |
1684406 |
caatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaa |
1684307 |
T |
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| Q |
118 |
taattggatgaatgatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctggaa |
217 |
Q |
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| T |
1684306 |
taattggatgaatgatttatacttaacccatattaattaata----tacactttcactgactactgcagatcagcaatggtattggagtaatctctggaa |
1684211 |
T |
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| Q |
218 |
ctgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatgat |
279 |
Q |
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| T |
1684210 |
ctgttcagctcatactatatggctattactggtgcaggggagataatcagattgatgatgat |
1684149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 1694841 - 1694570
Alignment:
| Q |
18 |
caatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaa |
117 |
Q |
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| T |
1694841 |
caatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaatttatattcctatagtattgttgtgatttgtgagttaa |
1694742 |
T |
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| Q |
118 |
ta---------------attggatgaatgatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattg |
202 |
Q |
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| T |
1694741 |
taattgtatgtaattcaattggattaaagatttatacttaacccatgtt-----attaatatacatttttactgattattgcagatcagtaatggtattg |
1694647 |
T |
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| Q |
203 |
gagtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatgat |
279 |
Q |
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| T |
1694646 |
gagtaatctctggaactattcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgat |
1694570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 1970616 - 1970553
Alignment:
| Q |
217 |
actgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatgatg |
280 |
Q |
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| T |
1970616 |
actgttcagctcatattatatgcttattactcgtgcaagggagaaaatcagattgatgatgatg |
1970553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 1699335 - 1699287
Alignment:
| Q |
190 |
agcaatggtattggagtaatctctggaactgttcagctcatactatatg |
238 |
Q |
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| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactatatg |
1699287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 1674033 - 1673944
Alignment:
| Q |
188 |
tcagcaatggtattggagtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagatagatgatg |
277 |
Q |
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| T |
1674033 |
tcagcaatggtattggagcaatctcaggttttgttcagctcatattatatgtttatttttggtgcaagggagaaaataagaatgatgatg |
1673944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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