View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_32 (Length: 282)

Name: NF3030_high_32
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_32
NF3030_high_32
[»] chr7 (1 HSPs)
chr7 (23-278)||(7235616-7235870)
[»] chr5 (1 HSPs)
chr5 (197-258)||(29490048-29490109)
[»] chr3 (6 HSPs)
chr3 (204-258)||(28423150-28423204)
chr3 (203-254)||(6069083-6069134)
chr3 (204-258)||(28718703-28718757)
chr3 (203-240)||(6113430-6113467)
chr3 (203-240)||(6120322-6120359)
chr3 (204-276)||(797355-797427)
[»] chr6 (1 HSPs)
chr6 (204-244)||(15002295-15002335)
[»] chr2 (1 HSPs)
chr2 (197-258)||(20657350-20657411)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 7235616 - 7235870
Alignment:
Q  23 tgaacctatgagtatcatacccaacgtagtacacaaatttcatattataaattattagttgttggagtaacaaaagatatacaccatataccttttgtaa 122  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  7235616 tgaacctatgagtaccatacccaacggagtacacaaatttcatattataaataattagttgttggagtaacaaaagatatacacaatataccttttgtaa 7235715  T
Q  123 gaatatttcacgagctgtcttttatttatttattgttgatacccaataaatttgnnnnnnnactttcacaaaccttatgactttgtactctaagatgatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  7235716 gaatatttcacgagctgtcttttatttatttattgttgatacccaataaatttgtttttttactttcacaaaccttatgactttgtactctaagatgatg 7235815  T
Q  223 ataatgaaataaaataaggcagcaaataatattattaatcttttcttcttctctct 278  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  7235816 ataatgaaataaaataaggcagcaaataatattatt-acattttcttcttctctct 7235870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 29490048 - 29490109
Alignment:
Q  197 ttatgactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 258  Q
    ||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||    
T  29490048 ttatggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataatcttatt 29490109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 28423204 - 28423150
Alignment:
Q  204 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 258  Q
    |||||||||| | | |||| |||||||||||||||||||||||||||||||||||    
T  28423204 tttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatt 28423150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 6069083 - 6069134
Alignment:
Q  203 ctttgtactctaagatgatgataatgaaataaaataaggcagcaaataatat 254  Q
    |||||||||||||||||||| ||||||||| |||||||  ||||||||||||    
T  6069083 ctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatat 6069134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 28718757 - 28718703
Alignment:
Q  204 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 258  Q
    |||||||||||||||||| ||||| |||||||||||| ||  |||||| ||||||    
T  28718757 tttgtactctaagatgatcataatcaaataaaataagtcaaaaaataaaattatt 28718703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 6113430 - 6113467
Alignment:
Q  203 ctttgtactctaagatgatgataatgaaataaaataag 240  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  6113430 ctttgtactctaagatgatggtaatgaaatcaaataag 6113467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 6120322 - 6120359
Alignment:
Q  203 ctttgtactctaagatgatgataatgaaataaaataag 240  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  6120322 ctttgtactctaagatgatggtaatgaaatcaaataag 6120359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 797355 - 797427
Alignment:
Q  204 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattattaatcttttcttcttctct 276  Q
    |||||||||||| || |||| |||||||| ||||||| ||||||  ||||||||| |  || |||||||||||    
T  797355 tttgtactctaaaataatgacaatgaaatgaaataagacagcaacaaatattatttagattatcttcttctct 797427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 15002295 - 15002335
Alignment:
Q  204 tttgtactctaagatgatgataatgaaataaaataaggcag 244  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  15002295 tttgtactctaagataatgataatgaaataaaataaggcag 15002335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 20657411 - 20657350
Alignment:
Q  197 ttatgactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 258  Q
    ||||||| | |||||||||||||||| |||  ||||||||| |||||| |||||||| ||||    
T  20657411 ttatgacgtggtactctaagatgatggtaaaaaaataaaattaggcagaaaataataatatt 20657350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University