View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_33 (Length: 280)

Name: NF3030_high_33
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_33
NF3030_high_33
[»] chr3 (3 HSPs)
chr3 (4-123)||(35113747-35113866)
chr3 (182-262)||(13540443-13540523)
chr3 (171-225)||(33366013-33366068)
[»] chr1 (4 HSPs)
chr1 (171-262)||(40908404-40908495)
chr1 (171-253)||(46566657-46566739)
chr1 (171-250)||(12606544-12606623)
chr1 (171-225)||(49195390-49195445)
[»] chr2 (1 HSPs)
chr2 (171-262)||(3081291-3081382)
[»] scaffold0238 (1 HSPs)
scaffold0238 (171-246)||(5329-5404)
[»] chr7 (1 HSPs)
chr7 (171-253)||(10646013-10646095)
[»] chr4 (1 HSPs)
chr4 (171-225)||(31525434-31525489)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 35113866 - 35113747
Alignment:
Q  4 tagtataccatatcattccactttatttcattgcacaataccgatccaaacatatcctgaaggggaaaagatcatctccatttacttggggtggagttcg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |    
T  35113866 tagtataccatatcattccactttatttcattgcacaataccgatccaaacatatcctgaaggggaaaggatcatctccatttacttgggctggagtttg 35113767  T
Q  104 aaccccgaactcctcactta 123  Q
    ||||||||||||||||||||    
T  35113766 aaccccgaactcctcactta 35113747  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 13540443 - 13540523
Alignment:
Q  182 ccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaatctttgcttttac 262  Q
    |||||| || ||| |||||||| |||| ||||||||| |||||| |||  || |||||||||||| |||||||||| ||||    
T  13540443 ccaaccgcacacttaatctcagtcgttcctttcatgatctttcatgtacttatataaaccaatcacaatctttgctcttac 13540523  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 33366013 - 33366068
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgcttt-catgacctttca 225  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||    
T  33366013 aatctcaactgccaaccacacactaaatcacagccgttgttttacatgacctttca 33366068  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 40908404 - 40908495
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaatctttgcttttac 262  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||    
T  40908404 aatctcatctgccaaccacacgttaaatctcagccgttgctttcatgacctttcatgtatttagataaaccaatcagaacatttgcttttac 40908495  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 46566657 - 46566739
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaatctt 253  Q
    ||||||||||||||||||||| ||||||||||||| ||| | | ||||||||||| ||  |||||||| ||||||| ||||||    
T  46566657 aatctcatctgccaaccacatcctaaatctcagcctttgatctgatgacctttcatgttcctagataacccaatcataatctt 46566739  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 12606623 - 12606544
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaat 250  Q
    |||| |||||||||||||||  ||||||||||||| ||| | | ||||||||||| || |||||||||| ||||||||||    
T  12606623 aatcccatctgccaaccacaccctaaatctcagcctttgatctgatgacctttcatgtttctagataaatcaatcagaat 12606544  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 49195445 - 49195390
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgcttt-catgacctttca 225  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||    
T  49195445 aatctcatctgccaaccacacactaaatcacagccgttgttttacatgacctttca 49195390  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 3081291 - 3081382
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaatctttgcttttac 262  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||  |||||||||||    
T  3081291 aatctcatctgccaatcacacattaaatctcagccgttgctttcatgacctttcatgtacctagataaatcaatcagaaaatttgcttttac 3081382  T

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Target: scaffold0238 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 5329 - 5404
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatca 246  Q
    |||| |||||||||||||||  ||||||||||||| ||| | | ||||||||||| || |||||||||||||||||    
T  5329 aatcccatctgccaaccacaccctaaatctcagcctttgatctgatgacctttcatgtttctagataaaccaatca 5404  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 10646095 - 10646013
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgctttcatgacctttcaagtatctagataaaccaatcagaatctt 253  Q
    ||||||||||||||||||||  ||||||||||||| ||| | | |||||| |||| ||  |||||||| ||||||| ||||||    
T  10646095 aatctcatctgccaaccacaccctaaatctcagcctttgatctgatgaccattcatgttcctagataacccaatcataatctt 10646013  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 31525489 - 31525434
Alignment:
Q  171 aatctcatctgccaaccacatactaaatctcagccgttgcttt-catgacctttca 225  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||    
T  31525489 aatctcaactgccaaccacacactaaatcacagccgttgttttacatgacctttca 31525434  T

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