View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_39 (Length: 250)
Name: NF3030_high_39
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47311310 - 47311552
Alignment:
| Q |
1 |
cagaaaaatgatgaagaataacaggttctttggtgtttttgctctttccttgaattgttgtatgaaatgaatttcatgatgagtactatgcaagttacat |
100 |
Q |
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| T |
47311310 |
cagaaaaatgatgaagaataacaggttctttggtgtttttgctctttccttgaattgttgtatgaaatgaatttcatgatgagtactatgcaagttacat |
47311409 |
T |
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| Q |
101 |
cacatgttaacatttccatttcttgtgtcaatttagctgtaaattttttccattgtacgtatacttagaagagtgccatttctttcaactagtagtgtct |
200 |
Q |
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| T |
47311410 |
cacatgt-aacatttccatctcttgtgtcaatttagctgcaaattttttccattgtacgtatacttagaagagtgccatttctttcaactagtagtgtct |
47311508 |
T |
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| Q |
201 |
atacagcaagtacatagaattgtatcaattgatattcatctcac |
244 |
Q |
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| T |
47311509 |
acacagcaagtacatagaattgtatcaattgatattcatatcac |
47311552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 47320474 - 47320522
Alignment:
| Q |
191 |
agtagtgtctatacagcaagtacatagaattgtatcaattgatattcat |
239 |
Q |
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| T |
47320474 |
agtagtgtgtatacaacaagtacgtagaattgtatcaattgatattcat |
47320522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 47316669 - 47316715
Alignment:
| Q |
21 |
acaggttctttggtgtttttgctctttccttgaattgttgtatgaaa |
67 |
Q |
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| T |
47316669 |
acaggttctttggtcctttttctcttttcttgaattgttgtatgaaa |
47316715 |
T |
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