View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_high_42 (Length: 248)
Name: NF3030_high_42
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 54657425 - 54657660
Alignment:
| Q |
1 |
attgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54657425 |
attgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagc |
54657524 |
T |
|
| Q |
101 |
cacagcccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54657525 |
cacaggccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctct |
54657624 |
T |
|
| Q |
201 |
attattaattaaatccgactacttgcacttatcttc |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54657625 |
attattaattaaatctaactacttgcacttatcttc |
54657660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 43733481 - 43733718
Alignment:
| Q |
3 |
tgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagcca |
102 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
43733481 |
tgtctctcatgcttatgatgtgctccacgaatggagctgcatgtaacgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccg |
43733580 |
T |
|
| Q |
103 |
cagcccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctat |
202 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
43733581 |
cagcccgaccatatcaaatgcaatgttgacacggtcaatttcaataataactttattactgcttacgatttatgctttagagactcaacgtgatctctat |
43733680 |
T |
|
| Q |
203 |
tattaattaaatccgactacttgcacttatcttcatct |
240 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
43733681 |
tattaggtaaatccgactacttgaacttatcttcatct |
43733718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28570767 - 28570534
Alignment:
| Q |
1 |
attgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagc |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
28570767 |
attgtctcttatgctcatgatgtgctacacgaatggagctgcatgcaacgagctaagcg---ggcaagccct-aagatcagcaatcgatgtggaccaagc |
28570672 |
T |
|
| Q |
101 |
cacagcccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctct |
200 |
Q |
| |
|
| || |||| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28570671 |
cgcaacccgaccacatcaaatgcaatgttgacgcatccaatttcaataataactctattatggcttacagtttatgctttagagactcaacatgatctct |
28570572 |
T |
|
| Q |
201 |
attattaattaaatccgactacttgcacttatcttcatct |
240 |
Q |
| |
|
||| ||| |||| | |||||||||||||||||||||||| |
|
|
| T |
28570571 |
att-ttaggtaaa-ctgactacttgcacttatcttcatct |
28570534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 29928810 - 29928707
Alignment:
| Q |
137 |
ccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
236 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
29928810 |
ccaatttcaataataactttattatggcttacaatttatgctttagagactcaacatgatctctgttatttgataaatgtgactacttgcacttatcttt |
29928711 |
T |
|
| Q |
237 |
atct |
240 |
Q |
| |
|
|||| |
|
|
| T |
29928710 |
atct |
29928707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29928919 - 29928835
Alignment:
| Q |
1 |
attgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaac |
85 |
Q |
| |
|
||||||||| |||| |||||||| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| |||| |
|
|
| T |
29928919 |
attgtctctcatgctcatgatgtgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaacaac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
17 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
76 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 34763053 - 34763013
Alignment:
| Q |
148 |
aataactctattatggcttatggtttatgctttagagactc |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763053 |
aataactctatcatgggctatggtttatgctttagagactc |
34763013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 34763794 - 34763834
Alignment:
| Q |
148 |
aataactctattatggcttatggtttatgctttagagactc |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763794 |
aataactctatcatgggctatggtttatgctttagagactc |
34763834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University