View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_43 (Length: 248)
Name: NF3030_high_43
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 48955436 - 48955200
Alignment:
| Q |
1 |
aaaaaacagaaagcgttacttttgatgaaaacacattctagaattttcttggttgatgaaagtaaattatagatttattagcatatgtagcataacagct |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
48955436 |
aaaaaacagaaagcgtttcttttgatgaaaacacactctagaattttcttggttgatgaaagtaaattatagatt-attagcatatgtagcataacaact |
48955338 |
T |
|
| Q |
101 |
taggaagattcacgttatataggacggtcctgttaaaactttcctctcaccgttatcatattcatgatactgatttcatatttagccccttccatatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48955337 |
taggaagattcacgttatataggacggtcctgttaaaacattcctctcaccgttatcatattcatgatactgatttcatatttagccccttccatatttt |
48955238 |
T |
|
| Q |
201 |
atatgattcttgataattctaacgtggttcactttcat |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
48955237 |
atatgattcttgataattctaacgtggttcactttcat |
48955200 |
T |
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