View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_48 (Length: 239)

Name: NF3030_high_48
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_48
NF3030_high_48
[»] chr2 (9 HSPs)
chr2 (19-236)||(19900395-19900610)
chr2 (152-234)||(35192538-35192620)
chr2 (19-95)||(27340299-27340375)
chr2 (159-220)||(44538703-44538764)
chr2 (159-231)||(5274941-5275013)
chr2 (163-222)||(310422-310481)
chr2 (159-234)||(44972113-44972188)
chr2 (159-213)||(7062503-7062557)
chr2 (159-197)||(34757089-34757127)
[»] chr4 (6 HSPs)
chr4 (21-97)||(11035748-11035824)
chr4 (19-97)||(33730825-33730903)
chr4 (159-234)||(44672490-44672565)
chr4 (143-234)||(5093238-5093329)
chr4 (159-220)||(3730523-3730583)
chr4 (159-222)||(54197528-54197590)
[»] chr6 (3 HSPs)
chr6 (162-234)||(16305910-16305982)
chr6 (159-235)||(27900416-27900492)
chr6 (159-222)||(10928858-10928921)
[»] chr5 (7 HSPs)
chr5 (24-96)||(42773214-42773286)
chr5 (159-234)||(42774800-42774875)
chr5 (151-207)||(14654767-14654823)
chr5 (160-222)||(28604702-28604764)
chr5 (159-234)||(3159703-3159779)
chr5 (159-233)||(38938076-38938150)
chr5 (159-222)||(1197733-1197796)
[»] chr8 (4 HSPs)
chr8 (159-234)||(24410546-24410621)
chr8 (19-74)||(23637335-23637390)
chr8 (19-72)||(23637428-23637481)
chr8 (180-234)||(24432986-24433040)
[»] chr3 (7 HSPs)
chr3 (159-234)||(34492902-34492977)
chr3 (152-234)||(28097116-28097198)
chr3 (165-235)||(37436611-37436681)
chr3 (159-216)||(51138995-51139052)
chr3 (159-234)||(13473747-13473822)
chr3 (152-217)||(53360138-53360203)
chr3 (187-234)||(3422082-3422129)
[»] chr1 (7 HSPs)
chr1 (159-234)||(8529011-8529086)
chr1 (159-234)||(30143585-30143660)
chr1 (19-97)||(24161717-24161795)
chr1 (159-234)||(30158262-30158336)
chr1 (162-206)||(43574413-43574457)
chr1 (159-234)||(50232354-50232428)
chr1 (171-220)||(29698436-29698485)
[»] scaffold0086 (1 HSPs)
scaffold0086 (19-97)||(49330-49408)
[»] chr7 (5 HSPs)
chr7 (159-222)||(11320508-11320570)
chr7 (159-233)||(20616412-20616487)
chr7 (160-220)||(20655102-20655163)
chr7 (159-197)||(9306911-9306949)
chr7 (159-197)||(9302473-9302511)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 19900395 - 19900610
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgactattcaactttgattacttgta 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  19900395 ctttcgaccatatacaatgcatctcatccattcaaatctaattgtggaaaaatatgatcaataagagtttgcattgactgttcgactttgattacttgta 19900494  T
Q  119 acatgaaagnnnnnnnnnnnnnnncttacagaataatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaact 218  Q
    |||||||||               ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  19900495 acatgaaag--aaaaagaaaaaaacttacagaataattttgaattctgatgcagagggctgagagagattgagaaaaactaaacaatgcaggaacgaact 19900592  T
Q  219 atgatctatgagaaccta 236  Q
    ||||||||||||||||||    
T  19900593 atgatctatgagaaccta 19900610  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 35192538 - 35192620
Alignment:
Q  152 taatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||    
T  35192538 taattttgaattctgatgcagagagctgagagaggttgagaaaaactaaacaatacgggaacgaactattaactgtgagaacc 35192620  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27340375 - 27340299
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattga 95  Q
    |||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||    
T  27340375 cttttgaccatatacgatgcatcccatccatgcaaatctaattatggaaaaatatgatcaataagagtttgtattga 27340299  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 44538703 - 44538764
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactat 220  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  44538703 gaattctgatgcagagggttgagagaggttgagaaaaactaaacaatgcggagacgaactat 44538764  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 5275013 - 5274941
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgaga 231  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||| || |||||    
T  5275013 gaattctgatgcagagggttgagagaggttgagaaaaattaaacaatgtgggaacaaactatgaactgtgaga 5274941  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 310481 - 310422
Alignment:
Q  163 tctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  310481 tctgatgcagaggactgagagaggttgagaaaaactaaacaatgcggtaacgaattatga 310422  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 44972113 - 44972188
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||||| ||||| ||| | ||||||| |||||||||||||||||||||||||||||| ||| | || ||||||||    
T  44972113 gaattcttatgcaaaggacagagagagattgagaaaaactaaacaatgcgggaacgaaatataaactgtgagaacc 44972188  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 7062557 - 7062503
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaac 213  Q
    ||||||||||| |||| ||| | |||| |||||||||||||||||||||||||||    
T  7062557 gaattctgatggagagagctcaaagagattgagaaaaactaaacaatgcgggaac 7062503  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 34757089 - 34757127
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaac 197  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  34757089 gaattctgatacagagggctgggagaggttgagaaaaac 34757127  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 11035748 - 11035824
Alignment:
Q  21 ttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgact 97  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  11035748 ttcgaccatatatgatgcatctcatccatgcaaatctaattgtggaaaaatatgatcaataagagtttgtattgact 11035824  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 33730903 - 33730825
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgact 97  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  33730903 ctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatcaataagagtttgtattgact 33730825  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 44672490 - 44672565
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  44672490 gaattctgatgcagagggttaagagaggttgagaaaaattaaacaatgcgggaacgaactatgaactgtgagaacc 44672565  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 5093238 - 5093329
Alignment:
Q  143 cttacagaataatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||| |||||  |||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| |||||||| || ||||||||    
T  5093238 cttacagattaattctgaattctgattcagagggctaagagaggttgagaaaaactaaacaatgtgagaacaaactatgaactgtgagaacc 5093329  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 3730583 - 3730523
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactat 220  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||| || |||||||    
T  3730583 gaattctgatgca-agggttgagagaggttgagaaaaattaaacaatgcggaaatgaactat 3730523  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 54197528 - 54197590
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||| || |||||| |||||    
T  54197528 gaattctgatcca-agggttgagagaggttgagaaaaactaaacaatgtggaaacgaattatga 54197590  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 16305910 - 16305982
Alignment:
Q  162 ttctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||    
T  16305910 ttctgatgcaaagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactattaactgtgagaacc 16305982  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 27900416 - 27900492
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacct 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||  | |||||||||    
T  27900416 gaattctgatgcaaagggctgagagaggttgagaaaaactaaacaatgcggaaacgaattatgaattgtgagaacct 27900492  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 10928921 - 10928858
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    |||||||||||||||| | || |||||||||||||||||||||||||  ||||||||| |||||    
T  10928921 gaattctgatgcagagagttgggagaggttgagaaaaactaaacaataagggaacgaaatatga 10928858  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 42773214 - 42773286
Alignment:
Q  24 gaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgac 96  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  42773214 gaccatatatgatgcatctcatctatgcaaatctaattgtggaaaaatatgatcaataagagtttgtattgac 42773286  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 42774800 - 42774875
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||    
T  42774800 gaattttgatgtagagggctgagagaggttgagaaaaactaaacaatgcggaaacaaactatgaactgtgagaacc 42774875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 14654767 - 14654823
Alignment:
Q  151 ataatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgc 207  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14654767 ataattttgaattctgatgcagagggctgagagaagttgagaaaaactaaacaatgc 14654823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 28604764 - 28604702
Alignment:
Q  160 aattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  28604764 aattctgatatagagggatgagagaggttgagaaaaactaaacaatacgggaacgaactatga 28604702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 3159703 - 3159779
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttg-agaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||||| |||||||||||| | ||||| |||||||||||||| ||||||||||| | ||||||||    
T  3159703 gaattctgatgcagagggttgagagaggttgaaaaaaaattaaacaatgcgggagcgaactatgatatgtgagaacc 3159779  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 38938076 - 38938150
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaac 233  Q
    ||||| |||||  ||||||||||||||||||||||||| |||||||| || |||| |||||||| || |||||||    
T  38938076 gaattatgatgatgagggctgagagaggttgagaaaaattaaacaatacgtgaacaaactatgaactgtgagaac 38938150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 1197796 - 1197733
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||  | ||||||| |||||    
T  1197796 gaattctgatgcggagagctgggagaggttgagaaaaactaaacaataagagaacgaaatatga 1197733  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 24410621 - 24410546
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||| || ||||||||    
T  24410621 gaattctgatgcagagggctgagcgaggttgagaaaagcttaacaatgcaggaacgaactatgaactgtgagaacc 24410546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 23637335 - 23637390
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatg 74  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  23637335 ctttcgaccatatatgatgcatcccatccatgcaaatctaattgtggaaaaatatg 23637390  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 23637481 - 23637428
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaata 72  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  23637481 ctttcgatcatatacgatgcatcccatccatgcaaatctaattgtggaaaaata 23637428  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 24433040 - 24432986
Alignment:
Q  180 agagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||||||||||||||||||||| |||||| | || ||||||||    
T  24433040 agagaggttgagaaaaactaaacaatgcgggaacaaactattaactgtgagaacc 24432986  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 34492977 - 34492902
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  34492977 gaattttgatgcagagggctgagagaagttgagacaaactaaacaatgcgggaacgaaatatgaactgtgagaacc 34492902  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 28097198 - 28097116
Alignment:
Q  152 taatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| | | |||||||||    
T  28097198 taattttgaattatgatgcggagggttgagagaggttgagaaaaacaaaacaatgcgggaacgaactattaaccatgagaacc 28097116  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 37436611 - 37436681
Alignment:
Q  165 tgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacct 235  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| || |||||||||    
T  37436611 tgatgcagagggctgagagaggttgataaaaacaaaacaatgcgggaacaaactatgaactgtgagaacct 37436681  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 51138995 - 51139052
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaa 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  51138995 gaattctgatgcagagggttgagagaggttgagaaaaactaaacaatgcgtgaacgaa 51139052  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 13473822 - 13473747
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| | ||| ||||||| | |||||| ||||    
T  13473822 gaattctgatgcagaaggcggagagaggttgagaaaaactaaacaatgggcgaatgaactataaactatgacaacc 13473747  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 53360203 - 53360138
Alignment:
Q  152 taatttagaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaac 217  Q
    |||||| ||||||||||| |||||| ||||||||| ||||||||| ||||||| ||||||||||||    
T  53360203 taattttgaattctgatgaagagggttgagagaggctgagaaaaattaaacaacgcgggaacgaac 53360138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 3422082 - 3422129
Alignment:
Q  187 ttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||||||||||||||| ||||||||| || ||||| |||||||||||    
T  3422082 ttgagaaaaactaaacagtgcgggaacaaattatgaactatgagaacc 3422129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 8529086 - 8529011
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| | || ||||||||    
T  8529086 gaattctgatgcagagggttgagagaggttaagaaaaacaaaacaatgcgggaacgaactattaactgtgagaacc 8529011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 30143585 - 30143660
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||  |||| || ||||||||    
T  30143585 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgtgggaatgaaacatgaactgtgagaacc 30143660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 24161717 - 24161795
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgact 97  Q
    ||||||| | |||||| |||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  24161717 ctttcgatcgtatacggtgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagtttgtattgact 24161795  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 30158262 - 30158336
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||    
T  30158262 gaattctgatgcaaaag-ctgagaaaggttgagaaaaactaaacaatgcgggaacgaaccatgaactgtgagaacc 30158336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 43574413 - 43574457
Alignment:
Q  162 ttctgatgcagagggctgagagaggttgagaaaaactaaacaatg 206  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  43574413 ttctgatgcagagggctgagagaggttgagaaaaactaaataatg 43574457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 50232428 - 50232354
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaacc 234  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||  |||||| || ||||| || ||||||||    
T  50232428 gaattctgatgcagagagctgggagaggttga-aaaaactaaacaataagggaacaaaatatgaactgtgagaacc 50232354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 29698436 - 29698485
Alignment:
Q  171 agagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactat 220  Q
    |||||| ||||||||||| |||||||| ||||||||| ||||| ||||||    
T  29698436 agagggttgagagaggttaagaaaaacaaaacaatgcaggaacaaactat 29698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 49408 - 49330
Alignment:
Q  19 ctttcgaccatatacgatgcatctcatccattcaaatctaattgtggaaaaatatgatccataagagtttgcattgact 97  Q
    |||||||| |||||||||||||  ||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||    
T  49408 ctttcgactatatacgatgcattccatccatgcaaatcaaattgtggaaaaatatgatcaataagagtttgtattgact 49330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 11320508 - 11320570
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaactaaacaatgcgggaacgaactatga 222  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  11320508 gaattctgatgtagagggctgagagag-ttgagaaaaacaaaacaatgcggaaacgaactatga 11320570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 20616412 - 20616487
Alignment:
Q  159 gaattctgatgcagagggct-gagagaggttgagaaaaactaaacaatgcgggaacgaactatgatctatgagaac 233  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||| |||||||| ||||| | ||||||||||    
T  20616412 gaattctgatgcagaggggttgagagacgttgagaaaaactaaacaatacgggaacggactattaactatgagaac 20616487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 20655102 - 20655163
Alignment:
Q  160 aattctgatgcagagggct-gagagaggttgagaaaaactaaacaatgcgggaacgaactat 220  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||    
T  20655102 aattctgatgcagaggggttgagagaggttgagaaaaactaaacaatacgggaacggactat 20655163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 9306949 - 9306911
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaac 197  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9306949 gaattctgatgcagagggctgagagaggttgagaaaaac 9306911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 9302511 - 9302473
Alignment:
Q  159 gaattctgatgcagagggctgagagaggttgagaaaaac 197  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9302511 gaattttgatgcagagggctgagagaggttgagaaaaac 9302473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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