View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_52 (Length: 233)

Name: NF3030_high_52
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_52
NF3030_high_52
[»] chr2 (6 HSPs)
chr2 (69-214)||(7390472-7390619)
chr2 (69-214)||(19586493-19586640)
chr2 (14-47)||(7390643-7390676)
chr2 (14-47)||(19586436-19586469)
chr2 (143-179)||(7390385-7390421)
chr2 (143-179)||(19586691-19586727)
[»] chr4 (5 HSPs)
chr4 (69-192)||(11658224-11658348)
chr4 (108-214)||(11658354-11658462)
chr4 (69-168)||(50234477-50234577)
chr4 (14-47)||(11658169-11658202)
chr4 (143-179)||(11658545-11658581)
[»] scaffold1463 (1 HSPs)
scaffold1463 (69-168)||(38-138)
[»] scaffold0368 (1 HSPs)
scaffold0368 (69-116)||(13519-13566)
[»] chr1 (3 HSPs)
chr1 (69-116)||(35598655-35598702)
chr1 (69-116)||(42837240-42837287)
chr1 (143-179)||(42837303-42837339)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 7390619 - 7390472
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaattaattataatttacacaaaattcaca-cctaatgtcaaattcgaaattagca 167  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  7390619 tctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaactataatttacacaaaattcacaccctaatgtcaaattcaaaattagca 7390520  T
Q  168 acattcacacaaaattgataatc-aaccattttgactataatgtaatt 214  Q
    | ||| ||||||||||||||||| |||||||||| ||||| |||||||    
T  7390519 aaatttacacaaaattgataatcaaaccattttggctatactgtaatt 7390472  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 19586493 - 19586640
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaattaattataatttacacaaaattcaca-cctaatgtcaaattcgaaattagca 167  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  19586493 tctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaactataatttacacaaaattcacaccctaatgtcaaattcaaaattagca 19586592  T
Q  168 acattcacacaaaattgataatc-aaccattttgactataatgtaatt 214  Q
    | ||| ||||||||||||||||| |||||||||| ||||| |||||||    
T  19586593 aaatttacacaaaattgataatcaaaccattttggctatactgtaatt 19586640  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 7390676 - 7390643
Alignment:
Q  14 cacagagaaagtaacgattacaaaaactaacaat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  7390676 cacagagaaagtaacgattacaaaaactaacaat 7390643  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 19586436 - 19586469
Alignment:
Q  14 cacagagaaagtaacgattacaaaaactaacaat 47  Q
    |||||||||||||||||||||| |||||||||||    
T  19586436 cacagagaaagtaacgattacagaaactaacaat 19586469  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 7390421 - 7390385
Alignment:
Q  143 cctaatgtcaaattcgaaattagcaacattcacacaa 179  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  7390421 cctaatgtcaaattcaaaattagcaaaattcacacaa 7390385  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 19586691 - 19586727
Alignment:
Q  143 cctaatgtcaaattcgaaattagcaacattcacacaa 179  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  19586691 cctaatgtcaaattcaaaattagcaaaattcacacaa 19586727  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 11658224 - 11658348
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaattaattataatttacacaaaattcaca-cctaatgtcaaattcgaaattagca 167  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11658224 tctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaactataatttacacaaaattcacaccctaatgtcaaattcaaaattagca 11658323  T
Q  168 acattcacacaaaattgataatcaa 192  Q
    | ||| |||||||||||||||||||    
T  11658324 aaatttacacaaaattgataatcaa 11658348  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 11658354 - 11658462
Alignment:
Q  108 tatcaaaattaattataatttacacaaaattcacacc-taatgtcaaattcgaaattagcaacattcacacaaaattgataatc-aaccattttgactat 205  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| ||||    
T  11658354 tatcaaaatcaactataatttacacaaaattcacaccctaatgtcaaattcaaaattagcaaaatttacacaaaattgataatcaaaccattttggctat 11658453  T
Q  206 aatgtaatt 214  Q
    | |||||||    
T  11658454 actgtaatt 11658462  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 50234477 - 50234577
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaattaattataatttacacaaaattcaca-cctaatgtcaaattcgaaattagca 167  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||||||| ||||| | |||||||||||||||||||||||||    
T  50234477 tctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaactataatttacacaatattcataccctaatgtcaaattcgaaattagca 50234576  T
Q  168 a 168  Q
    |    
T  50234577 a 50234577  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 11658169 - 11658202
Alignment:
Q  14 cacagagaaagtaacgattacaaaaactaacaat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  11658169 cacagagaaagtaacgattacaaaaactaacaat 11658202  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 11658545 - 11658581
Alignment:
Q  143 cctaatgtcaaattcgaaattagcaacattcacacaa 179  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  11658545 cctaatgtcaaattcaaaattagcaaaattcacacaa 11658581  T

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Target: scaffold1463 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 138 - 38
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaattaattataatttacacaaaattcaca-cctaatgtcaaattcgaaattagca 167  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||||||||||||||||    
T  138 tctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaactataatttacataaaattcataccctaatgtcaaattcgaaattagca 39  T
Q  168 a 168  Q
    |    
T  38 a 38  T

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Target: scaffold0368 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 13566 - 13519
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaat 116  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||    
T  13566 tctaacaatgaagaaaaaagtataattcacacaatcacatatcaaaat 13519  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 35598702 - 35598655
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaat 116  Q
    |||||||||||||||||| || || ||| |||||||||||||||||||    
T  35598702 tctaacaatgaagaaaaagctatatttcacacaatcacatatcaaaat 35598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 42837240 - 42837287
Alignment:
Q  69 tctaacaatgaagaaaaaactgtaattcgcacaatcacatatcaaaat 116  Q
    ||||||||||||||||||  | |||||| |||||||||||||||||||    
T  42837240 tctaacaatgaagaaaaagttataattcacacaatcacatatcaaaat 42837287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 42837303 - 42837339
Alignment:
Q  143 cctaatgtcaaattcgaaattagcaacattcacacaa 179  Q
    ||||||||||||||||||||||| || ||||||||||    
T  42837303 cctaatgtcaaattcgaaattagaaaaattcacacaa 42837339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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