View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_high_55 (Length: 222)
Name: NF3030_high_55
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 32654317 - 32654145
Alignment:
| Q |
32 |
atttttatgctgagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctactttttgtgnnnnnnnnnnnnnnnnggcttaca |
131 |
Q |
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| T |
32654317 |
atttttttgcttagattacgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctattttttgtgtttttttttttt----ggcttaca |
32654222 |
T |
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| Q |
132 |
acatccaagttgcaaaatcatttttaatgattacaattctcagacaaccccttctccctttcgcgtctctcctttgc |
208 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
32654221 |
acatccaagttgcaaaatcattttcaatgattacaattctcagacaaccccttctccctgttgcgtctctcctttgc |
32654145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 36191862 - 36191698
Alignment:
| Q |
43 |
gagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctactttttgtgnnnnnnnnnnnnnnnnggcttacaacatccaagtt |
142 |
Q |
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| T |
36191862 |
gagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctattttttgtgtgtgtgtgtgttttt-ggcttgcaacatccaagtt |
36191764 |
T |
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| Q |
143 |
gcaaaatcatttttaatgattacaattctcagacaaccccttctccctttcgcgtctctcctttgc |
208 |
Q |
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| T |
36191763 |
gcaaaatcattttcaatgattacaattctcagacagccccttctccctgtcgcgtctctcctttgc |
36191698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 5055660 - 5055705
Alignment:
| Q |
132 |
acatccaagttgcaaaatcatttttaatgattacaattctcagaca |
177 |
Q |
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| T |
5055660 |
acatcgaagttgcaaaatcattttcaatgattacaattctcagaca |
5055705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 5055580 - 5055631
Alignment:
| Q |
43 |
gagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctc |
94 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
5055580 |
gagattccaaacctgtggaatcgctgtgaaaatttaaaatcctagaattctc |
5055631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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