View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_6 (Length: 578)

Name: NF3030_high_6
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_6
NF3030_high_6
[»] chr6 (12 HSPs)
chr6 (408-501)||(1831209-1831304)
chr6 (413-514)||(15603721-15603824)
chr6 (414-503)||(11680417-11680508)
chr6 (408-474)||(1131873-1131939)
chr6 (406-467)||(13758522-13758583)
chr6 (406-449)||(15060267-15060310)
chr6 (408-474)||(22012054-22012121)
chr6 (414-449)||(26817743-26817778)
chr6 (408-450)||(1423078-1423120)
chr6 (408-474)||(18675452-18675518)
chr6 (408-474)||(34043643-34043710)
chr6 (408-474)||(20990538-20990604)
[»] chr2 (10 HSPs)
chr2 (408-525)||(31548801-31548920)
chr2 (408-503)||(25621891-25621987)
chr2 (406-449)||(6883759-6883802)
chr2 (408-449)||(7444046-7444087)
chr2 (219-327)||(31548615-31548723)
chr2 (408-474)||(44322160-44322227)
chr2 (408-474)||(6221485-6221552)
chr2 (408-474)||(33015131-33015198)
chr2 (408-474)||(44313981-44314048)
chr2 (408-474)||(2554155-2554221)
[»] chr4 (9 HSPs)
chr4 (406-503)||(10142585-10142684)
chr4 (410-499)||(13957694-13957785)
chr4 (406-474)||(52460640-52460708)
chr4 (406-463)||(25201776-25201833)
chr4 (406-449)||(3665085-3665128)
chr4 (410-446)||(24611029-24611065)
chr4 (408-474)||(10094960-10095027)
chr4 (412-503)||(42511284-42511377)
chr4 (408-449)||(31915592-31915633)
[»] chr8 (9 HSPs)
chr8 (407-525)||(23231934-23232054)
chr8 (406-499)||(9381777-9381872)
chr8 (406-503)||(11648049-11648148)
chr8 (408-474)||(1981695-1981762)
chr8 (408-474)||(16729829-16729895)
chr8 (406-503)||(602067-602166)
chr8 (408-449)||(7263571-7263612)
chr8 (223-327)||(11647869-11647973)
chr8 (372-408)||(23231934-23231970)
[»] chr7 (10 HSPs)
chr7 (406-503)||(8113441-8113540)
chr7 (416-503)||(43178549-43178638)
chr7 (408-449)||(20394724-20394765)
chr7 (410-503)||(24441602-24441697)
chr7 (408-474)||(8389237-8389304)
chr7 (407-449)||(9420803-9420845)
chr7 (412-474)||(21863958-21864020)
chr7 (406-449)||(3123703-3123746)
chr7 (408-474)||(13754214-13754280)
chr7 (408-449)||(35477916-35477957)
[»] chr3 (7 HSPs)
chr3 (406-503)||(44879887-44879986)
chr3 (406-502)||(47185419-47185517)
chr3 (406-474)||(33100367-33100435)
chr3 (408-466)||(15760966-15761025)
chr3 (408-474)||(19157192-19157259)
chr3 (408-474)||(27941454-27941521)
chr3 (408-474)||(52448242-52448308)
[»] chr1 (12 HSPs)
chr1 (406-503)||(12028198-12028297)
chr1 (406-474)||(9023523-9023591)
chr1 (408-449)||(44310772-44310813)
chr1 (406-450)||(42055752-42055796)
chr1 (408-503)||(48646364-48646465)
chr1 (408-441)||(23664046-23664079)
chr1 (408-448)||(5208382-5208422)
chr1 (408-474)||(21906478-21906545)
chr1 (408-474)||(34307384-34307451)
chr1 (408-474)||(48596290-48596357)
chr1 (371-408)||(42055752-42055789)
chr1 (409-441)||(25095299-25095331)
[»] chr5 (17 HSPs)
chr5 (406-474)||(13820548-13820616)
chr5 (406-501)||(43170958-43171055)
chr5 (410-449)||(29789921-29789960)
chr5 (406-449)||(37135209-37135252)
chr5 (408-474)||(5578547-5578613)
chr5 (410-525)||(8805959-8806076)
chr5 (408-450)||(26402397-26402439)
chr5 (408-449)||(5120439-5120480)
chr5 (408-449)||(39537338-39537379)
chr5 (410-474)||(29150696-29150760)
chr5 (406-449)||(16686673-16686716)
chr5 (408-474)||(23962949-23963016)
chr5 (408-474)||(13490489-13490555)
chr5 (371-408)||(13820548-13820585)
chr5 (223-327)||(6769112-6769216)
chr5 (406-450)||(13825893-13825937)
chr5 (408-444)||(20891066-20891102)
[»] scaffold1266 (1 HSPs)
scaffold1266 (406-474)||(1672-1740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (406-503)||(1036-1135)
[»] scaffold0263 (1 HSPs)
scaffold0263 (406-474)||(18278-18346)
[»] scaffold0116 (1 HSPs)
scaffold0116 (406-437)||(41108-41139)
[»] scaffold1364 (1 HSPs)
scaffold1364 (406-450)||(1230-1274)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 1831304 - 1831209
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 501  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||   || |||||||||||||||||||||||    
T  1831304 acaccaaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaagaataataacaccaaaaaa 1831209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 15603721 - 15603824
Alignment:
Q  413 aaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttacatt 510  Q
    |||||||||||||||||| ||||||||||||||||||  | |||  ||||| | || |||||   |||||||||||||||||||||||||| ||||||||    
T  15603721 aaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaattttagcacctaagaataataacaccaaaaaactttacatt 15603820  T
Q  511 acta 514  Q
    ||||    
T  15603821 acta 15603824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 503
Target Start/End: Original strand, 11680417 - 11680508
Alignment:
Q  414 aaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgca--atttacacctaagaataataacaccaaaaaagt 503  Q
    |||||||||||||||||||||||||| |||||||||  |  || |||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgcgaagtatactgaaatattaacacctaagaataataacaccaaaaaagt 11680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 1131939 - 1131873
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| || |||||    
T  1131939 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagtacatgtgaagtagattgaaattt 1131873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 467
Target Start/End: Original strand, 13758522 - 13758583
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagact 467  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |  |||||||||||||    
T  13758522 agacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagact 13758583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 15060310 - 15060267
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15060310 agacaccaaaacaaaataaaataccatagaagtagagaacaata 15060267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 22012054 - 22012121
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  22012054 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 22012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 449
Target Start/End: Complemental strand, 26817778 - 26817743
Alignment:
Q  414 aaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817778 aaacaaaataaaatatcgtagaagtagagaacaata 26817743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 1423120 - 1423078
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 450  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1423120 acaccaaaacaaaataaaatatcgtaggagtagagaaaaataa 1423078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 18675518 - 18675452
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    |||||||||||||||||||||||| || ||||||||| ||||| |  || ||||||||||| |||||    
T  18675518 acaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaattt 18675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 34043710 - 34043643
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  34043710 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 34043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 20990604 - 20990538
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  20990604 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 20990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 408 - 525
Target Start/End: Original strand, 31548801 - 31548920
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagttt 505  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  || ||||||||||| |||||   |||| |||||||||||||| |||||||||     
T  31548801 acaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaattttaccaccaaagaataataacacaaaaaaagttg 31548900  T
Q  506 acattactaaacgcgtctca 525  Q
    |||||||||||  |||||||    
T  31548901 acattactaaattcgtctca 31548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 503
Target Start/End: Complemental strand, 25621987 - 25621891
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagt 503  Q
    |||||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||    || |||||||||||||||||| |||||    
T  25621987 acaccaaaacaaaataaaatatcgtaaaagtatagaacaataatca-tgtgaagtagactgaaattttagaacttaagaataataacaccaacaaagt 25621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 6883802 - 6883759
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6883802 agacaccaaaacaaaataagatatcgtagaagtagagaacaata 6883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 7444087 - 7444046
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7444087 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 7444046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 31548615 - 31548723
Alignment:
Q  219 gtttctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggt 318  Q
    ||||||||||||||||| |||||| || |||||||| ||||| ||| ||| ||||||||||   ||| ||  | || |||||||| | ||||| ||||||    
T  31548615 gtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataatacataacaaacttttttagttcattgttgttattttattaggt 31548714  T
Q  319 cttcatttc 327  Q
    |||||||||    
T  31548715 cttcatttc 31548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 44322160 - 44322227
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  44322160 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 44322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 6221552 - 6221485
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  6221552 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 6221485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 33015131 - 33015198
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  33015131 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 33015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 44313981 - 44314048
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  44313981 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattt 44314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 2554221 - 2554155
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||| ||||||| || |||||||||| ||||  |  |||||||||||||| |||||    
T  2554221 acaccaaaacaaaatgaaatatcctacaagtagagaaaaatagcacatgtgaagtagactgaaattt 2554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 503
Target Start/End: Complemental strand, 10142684 - 10142585
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  |  |||||||||||||| |||||   ||||| ||||||||||||||||||||||    
T  10142684 agacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacctgagaataataacaccaaaaaagt 10142585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 13957785 - 13957694
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 499  Q
    |||||||||||||||||||||||||||||| |||||||||  |  ||  |||||||||| |||||   |||||||||||||||| |||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaatttgagcacctaagaataataataccaaaa 13957694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 52460708 - 52460640
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||    
T  52460708 agacaccgaaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattt 52460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 25201833 - 25201776
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagta 463  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  25201833 agacaccaacacaagataaaataccgtagaagtagagaacaataatacctttgaagta 25201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 3665085 - 3665128
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3665085 agacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 24611029 - 24611065
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaaca 446  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24611029 accaaaacaaaataaaataccgtagaagtagagaaca 24611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 10094960 - 10095027
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  10094960 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 10095027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 503
Target Start/End: Original strand, 42511284 - 42511377
Alignment:
Q  412 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    ||||||| |||||||||||||||||||| |||||||||  |   |  |||||||||| |||||   ||||||| |||| |||||||||||||||    
T  42511284 caaaacataataaaatatcgtagaagtatagaacaatagcacacgcaaagtagactgaaattttagcacctaaaaatattaacaccaaaaaagt 42511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 31915633 - 31915592
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||| | |||||||||| |||||||    
T  31915633 acaccaaaacaaaataaaataccatagaagtagacaacaata 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 407 - 525
Target Start/End: Original strand, 23231934 - 23232054
Alignment:
Q  407 gacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagtt 504  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||  |||||| |||| |||||    |||||||||||||||||| ||||| |||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagagaacaataacacctacgaagtatactgaaattttagtacctaagaataataacacaaaaaaggtt 23232033  T
Q  505 tacattactaaacgcgtctca 525  Q
     ||||||||||| | ||||||    
T  23232034 gacattactaaatgtgtctca 23232054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 9381777 - 9381872
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 499  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||    
T  9381777 agacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaagaataataacacaaaaa 9381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 406 - 503
Target Start/End: Original strand, 11648049 - 11648148
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagt 503  Q
    |||||| ||||||||||||||||   || |||||| ||||||||| |  || ||||||||||| |||||   ||||||||||||||||||||||||||||    
T  11648049 agacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaattttagcacctaagaataataacaccaaaaaagt 11648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 1981762 - 1981695
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  || |||||||||||||| |||||    
T  1981762 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 1981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 16729895 - 16729829
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||| |||||    
T  16729895 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaattt 16729829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 503
Target Start/End: Original strand, 602067 - 602166
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    ||||| |||||||||||||||||| || ||||||||||||||||  ||||   |||||  ||  |||||   || |||||||||||||||||||||||||    
T  602067 agacaacaaaacaaaataaaatattgttgaagtagagaacaatagcatctacaaagtaagcttaaattttagcaactaagaataataacaccaaaaaagt 602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 7263571 - 7263612
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  7263571 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 7263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 11647869 - 11647973
Alignment:
Q  223 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 322  Q
    |||||||||||||   |||| ||||||||||| ||||||| | ||  ||||||||||| ||||    || || ||| |||| ||||||| ||||||||||    
T  11647869 ctagagttttacagaccttagacataatatgagaaaagagcccctaacataatacatcataaaaaaaattagttcactgttatgattttattaggtcttc 11647968  T
Q  323 atttc 327  Q
    |||||    
T  11647969 atttc 11647973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 23231934 - 23231970
Alignment:
Q  372 gacaccaaaagaaaataaaataccgtagaagttgaga 408  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagaga 23231970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 406 - 503
Target Start/End: Original strand, 8113441 - 8113540
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || |||||| |||| |||||   ||||||||||||||||||| ||||||||    
T  8113441 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaattttagcacctaagaataataacacaaaaaaagt 8113540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 43178549 - 43178638
Alignment:
Q  416 acaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    ||||||||||||||||||| |||| |||||||||  | || ||||||| ||| ||||||  ||||||||||| |||||||||||||||||    
T  43178549 acaaaataaaatatcgtaggagtaaagaacaatagcacctatgaagtaaactacaattttaacacctaagaacaataacaccaaaaaagt 43178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 20394724 - 20394765
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20394724 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 20394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 503
Target Start/End: Original strand, 24441602 - 24441697
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    ||||||| | ||||||||||| |||||||| |||||||||  |  ||| |||||||||| ||| |  ||||||||||||||||||| |||||||||    
T  24441602 accaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaagaataataacagcaaaaaagt 24441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 8389237 - 8389304
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||| |||||    
T  8389237 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagactgaaattt 8389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 449
Target Start/End: Complemental strand, 9420845 - 9420803
Alignment:
Q  407 gacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  9420845 gacaccaacacataataaaatatcgtagaagtagagaacaata 9420803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 21864020 - 21863958
Alignment:
Q  412 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| |||||||| || |||||    
T  21864020 caaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaattt 21863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 3123703 - 3123746
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||    
T  3123703 agacaccaaaacaaaataaaataccgtagaaatagataacaata 3123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 13754280 - 13754214
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  13754280 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 13754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 35477916 - 35477957
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  35477916 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 35477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 406 - 503
Target Start/End: Complemental strand, 44879986 - 44879887
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || ||||||||||  |||||   ||||||||||||||||||||||| ||||    
T  44879986 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattttagcacctaagaataataacaccaaacaagt 44879887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 502
Target Start/End: Complemental strand, 47185517 - 47185419
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaag 502  Q
    ||||| |||||||| |||||||||||||||| || |||||||||  |  |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  47185517 agacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaattttgacacctaagaataataacaccagaaaag 47185419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 33100367 - 33100435
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||||||  | ||||| ||||||||||||| |  || ||||||||||| |||||    
T  33100367 agacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattt 33100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 15761025 - 15760966
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagac 466  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||    
T  15761025 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagac 15760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 19157259 - 19157192
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  19157259 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 19157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 27941454 - 27941521
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  27941454 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 27941521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 52448308 - 52448242
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  52448308 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 52448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 406 - 503
Target Start/End: Complemental strand, 12028297 - 12028198
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    |||||| |||||||||||||||||| |||||||| ||||||| || |  |||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  12028297 agacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaataataacaccaaaaaagt 12028198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 9023591 - 9023523
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||| |||||    
T  9023591 agacaccaaaacaaaataaaatatcgtaaaagtagagaacaataatacatgcgaagtatactgaaattt 9023523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 44310813 - 44310772
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310813 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 44310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 42055752 - 42055796
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 450  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagagaacaataa 42055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 503
Target Start/End: Complemental strand, 48646465 - 48646364
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaaca--ataata---tctgtgaagtagactgcaattta-cacctaagaataataacaccaaaaaa 501  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||   | || ||| ||||||  | |||| ||||||||||||||||||||||||||    
T  48646465 acaccaacacaaaataaaatatcgtagaagtatagaacaatataatagattatgcgaaatagactaaattttagcacctaagaataataacaccaaaaaa 48646366  T
Q  502 gt 503  Q
    ||    
T  48646365 gt 48646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 23664046 - 23664079
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtaga 441  Q
    ||||||||||||||||||||||||||||||||||    
T  23664046 acaccaaaacaaaataaaatatcgtagaagtaga 23664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 5208382 - 5208422
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaat 448  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5208382 acaccaaaataaaataaaatatcgtagaagtatagaacaat 5208422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 21906545 - 21906478
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  21906545 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 21906478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 34307384 - 34307451
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |  ||||||||||| || |||||    
T  34307384 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcacatgtgaagtagaatgaaattt 34307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 48596290 - 48596357
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  48596290 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 48596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 42055752 - 42055789
Alignment:
Q  371 agacaccaaaagaaaataaaataccgtagaagttgaga 408  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagaga 42055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 25095331 - 25095299
Alignment:
Q  409 caccaaaacaaaataaaatatcgtagaagtaga 441  Q
    ||||||||||||||||||||||||| |||||||    
T  25095331 caccaaaacaaaataaaatatcgtaaaagtaga 25095299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 13820548 - 13820616
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||||| |||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaattt 13820616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 501
Target Start/End: Original strand, 43170958 - 43171055
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 501  Q
    |||||||||||||||||||||||||||||||| |  ||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||||    
T  43170958 agacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaattttagcacctaagaataataacacgaaaaaa 43171055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 29789960 - 29789921
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaata 29789921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 37135252 - 37135209
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  37135252 agacaccaaaacaacataaaatatcttagaagtagagaacaata 37135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 5578547 - 5578613
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    |||||||||||||||||||||||||| |||||||||| ||||  || ||  |||||||||| |||||    
T  5578547 acaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaattt 5578613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 525
Target Start/End: Original strand, 8805959 - 8806076
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttac 507  Q
    ||||||||||||||||||| |||||||||||| |||||||  | ||   |  || |||| | |||   ||||||||| ||||||||| ||||||||| ||    
T  8805959 accaaaacaaaataaaataccgtagaagtagataacaatagcaccttcaacatatactgaagttttagcacctaagagtaataacacaaaaaaagttgac 8806058  T
Q  508 attactaaacgcgtctca 525  Q
    ||||||||| ||||||||    
T  8806059 attactaaatgcgtctca 8806076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 26402439 - 26402397
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 450  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  26402439 acaccaaaacaaaataaaataccgtagaagtagcgaacaataa 26402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 5120439 - 5120480
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  5120439 acaccaaaacaaaataaaataccgtagaagtatagaacaata 5120480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 39537338 - 39537379
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  39537338 acaccaaaacaaaataaaatatcttagaagtagagaaaaata 39537379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 29150760 - 29150696
Alignment:
Q  410 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |  || ||||||||||| |||||    
T  29150760 accaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaattt 29150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 16686673 - 16686716
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 449  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  16686673 agacaccaaaacaaaataaaataccgtataagtatagaacaata 16686716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 23963016 - 23962949
Alignment:
Q  408 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  23963016 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 23962949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 13490555 - 13490489
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    |||||||||||||||||||| ||||||||||| |||| ||||  |  || ||||||||||| |||||    
T  13490555 acaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaattt 13490489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 13820548 - 13820585
Alignment:
Q  371 agacaccaaaagaaaataaaataccgtagaagttgaga 408  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagaga 13820585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 6769112 - 6769216
Alignment:
Q  223 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 322  Q
    ||||||||||||| | ||||| |||||||||| |||||   | |||  |||||||||| ||| |||  | ||||||||||| ||||||| | ||||||||    
T  6769112 ctagagttttacaggccttaagcataatatgagaaaaggtccccttagataatacatcataattttttttagctcattgttgtgattttatcaggtcttc 6769211  T
Q  323 atttc 327  Q
     ||||    
T  6769212 ttttc 6769216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 13825893 - 13825937
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 450  Q
    |||||| ||||||||| |||||| |||| ||||||||||||||||    
T  13825893 agacacaaaaacaaaacaaaataccgtaaaagtagagaacaataa 13825937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 20891066 - 20891102
Alignment:
Q  408 acaccaaaacaaaataaaatatcgtagaagtagagaa 444  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  20891066 acaccaaaacaaaataaaatattgtagaagtaaagaa 20891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 1740 - 1672
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||| |||||    
T  1740 agacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaattt 1672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 503
Target Start/End: Complemental strand, 1135 - 1036
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 503  Q
    ||||||||||||||||||||||||| ||||| || |||||||||  |  ||  |||||||||  |||||  | ||||||||||||||||||| |||||||    
T  1135 agacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaattttaaaacctaagaataataacacccaaaaagt 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 18278 - 18346
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 474  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||| |  | |||||||||||| |||||    
T  18278 agacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaattt 18346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Complemental strand, 41139 - 41108
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaag 437  Q
    ||||||||||||||||||||||||||||||||    
T  41139 agacaccaaaacaaaataaaatatcgtagaag 41108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 1274 - 1230
Alignment:
Q  406 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 450  Q
    ||||| |||| |||||||||||| |||||||||||| ||||||||    
T  1274 agacatcaaaccaaaataaaataccgtagaagtagaaaacaataa 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University