View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_high_8 (Length: 545)
Name: NF3030_high_8
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 34042581 - 34042998
Alignment:
| Q |
9 |
gagaagaaaagtggtaattgaagaagaacagtatacaaaagaagatcatggttacatgctgcatagattttagcaacaaagatttggaaataagcttctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042581 |
gagaagaaaagtggtaattgaagaagaacagtatacaaaagaagatcatggttacatgctgcatagattttagcaacaaagatttggaaataagcttctt |
34042680 |
T |
|
| Q |
109 |
tgttttcaagcctactgtagtaattgttgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatcttggttgtgtacaaagctcaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042681 |
tgttttcaagcctactgtagtaattgttgaccgtcttattcatgaaatcaaacaattttcctcacgtgctgagaatcttggttgtgtacaaagctcaata |
34042780 |
T |
|
| Q |
209 |
cttaagagcatccatggaaatatggtatatatttccatcttttatttctcttgtttttcttatattttggttcatagctagtattaaaagaaattgtact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042781 |
cttaagagcatccatggaaatatggtatatatttccatcttttatttctcttgtttttcttatattttggttcatagctagtattaaaagaaattg---- |
34042876 |
T |
|
| Q |
309 |
gatactatactgatactagatcatatggtttggagcatggcaaaaacggtcttatgatgaaaaggataaattgacagctgaccttgtaagtaatgacctc |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34042877 |
-------tactcatactagatcatatggtttggagcatggcaaaaacggtcttatgatgaaaaggataaattgacagctgaccttgtaagt-atgacctc |
34042968 |
T |
|
| Q |
409 |
tgactaattgacatttatctgttatatgat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34042969 |
tgactaattgacatttatctgttatatgat |
34042998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 475 - 530
Target Start/End: Original strand, 34043023 - 34043078
Alignment:
| Q |
475 |
ctcttacagctatcaattctaatacatgtaacaagaatggctgtcttggttgaaca |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34043023 |
ctcttacagctatcaattctaatacatgtaacaagaatggctgtcttggttgaaca |
34043078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 52523552 - 52523501
Alignment:
| Q |
136 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52523552 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
52523501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 5898750 - 5898909
Alignment:
| Q |
76 |
ttttagcaacaaagatttggaaataagcttctttgttttcaagcctactgtagtaattgttgaccatcttattcatgaaatcaaacaattttcctcacgt |
175 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||| || | || ||| | || ||||| |||||| |||||||||| |||| | | |
|
|
| T |
5898750 |
ttttaacaacaagaatttggaaataagtttctttgttttcaagccaacaattgtgattatagatgatcttgttcatggtctcaaacaattctccttaact |
5898849 |
T |
|
| Q |
176 |
gctgagaatcttggttgtgtacaaagctcaatacttaagagcatccatggaaatatggta |
235 |
Q |
| |
|
|||| | ||||||||||| |||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
5898850 |
actgaaacccttggttgtgttcaaagctctatatttagaagcatccatggaaatatggta |
5898909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University