View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_low_1 (Length: 816)

Name: NF3030_low_1
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_low_1
NF3030_low_1
[»] chr3 (15 HSPs)
chr3 (195-811)||(35928172-35928787)
chr3 (667-810)||(35910781-35910924)
chr3 (656-810)||(35921579-35921733)
chr3 (657-810)||(35915208-35915361)
chr3 (595-810)||(35934989-35935205)
chr3 (683-810)||(35940558-35940685)
chr3 (17-99)||(35928879-35928961)
chr3 (17-92)||(35911552-35911627)
chr3 (18-96)||(35935519-35935597)
chr3 (17-84)||(35915947-35916014)
chr3 (17-89)||(35941076-35941148)
chr3 (17-84)||(35922216-35922283)
chr3 (281-322)||(35915684-35915725)
chr3 (282-323)||(35922044-35922085)
chr3 (266-315)||(35940804-35940852)


Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 195 - 811
Target Start/End: Complemental strand, 35928787 - 35928172
Alignment:
Q  195 ccttgaaaacacaacatgacatcagaagaaatgatataatatttctatcaaaatatagaaaggaatgatatattattagttaatattttgattgatgaca 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35928787 ccttgaaaacacaacatgacatcagaagaaatgatatattatttctatcaaaataaagaaaggaatgatatattattagttaatattttgattgatgaca 35928688  T
Q  295 taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattattttcatattgaaaatgaaagaacatagtgcaac 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  35928687 taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattatttttatattgaaaatgaaagaacatagtgaaac 35928588  T
Q  395 ctggttattaatttattttgagcatcatgatctaaacttacctcttgatgaaatgattttgatcatggttagaaaaacctcaagaaatcttttacgaatt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35928587 ctggttattaatttattttgagcatcatgatctaaacttacctcttgatgaaatgattttgatcatggttagaaaaacctcgagaaatcttttacgaatt 35928488  T
Q  495 tacaattacgagtcataaaaacgaactacctcacatgaatactcctccttttatagtgaactcttatgagttctggtaaactctaattaaatctagataa 594  Q
    |||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35928487 tacaattatgagtcataaaaacgaactacctcacatgaatac---tccttttatagtgaactcttatgagttccggtaaactctaattaaatctagataa 35928391  T
Q  595 acatttgattttac--tagcaagttaacgagttgagtggacaaaagataaacaaatttacctaactctcgagtttgacagctttgattctgacaacataa 692  Q
    ||||||||||||||  ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35928390 acatttgattttactatagcaagttaaagagttgagtcgaccaaagataaacaaatttacctaactctcgagtttgacagctttgattctgacaacataa 35928291  T
Q  693 tgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgacggcaaaacactatacc 792  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35928290 tgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgatggcaaaacactatacc 35928191  T
Q  793 gtaacccatattcttggac 811  Q
    |||||| |||| |||||||    
T  35928190 gtaaccaatatgcttggac 35928172  T

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Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 667 - 810
Target Start/End: Complemental strand, 35910924 - 35910781
Alignment:
Q  667 tgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaat 766  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35910924 tgacagctttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaat 35910825  T
Q  767 caactctgacggcaaaacactataccgtaacccatattcttgga 810  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  35910824 caactctgatggcaaaacactataccgtaacccatatgcttgga 35910781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 656 - 810
Target Start/End: Complemental strand, 35921733 - 35921579
Alignment:
Q  656 actctcgagtttgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctagga 755  Q
    |||||| |||||| ||||||  ||| ||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||| |||    
T  35921733 actctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgttcctcactgggatatggagcctttgaggagctcgga 35921634  T
Q  756 cccttcagaatcaactctgacggcaaaacactataccgtaacccatattcttgga 810  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||    
T  35921633 cccttcagagtcaactctgatggcaaaacattataccgtaacccatatgcttgga 35921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 657 - 810
Target Start/End: Complemental strand, 35915361 - 35915208
Alignment:
Q  657 ctctcgagtttgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggac 756  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||| ||||| ||||    
T  35915361 ctctcgagtttgaaagcttcgattttgacaacataatgtttgaaactcgcaggacctggttgttcctcactgggatatggagcctttcaagagctcggac 35915262  T
Q  757 ccttcagaatcaactctgacggcaaaacactataccgtaacccatattcttgga 810  Q
    |||||||| |||| ||||| || |||||| ||||||| ||||||||| ||||||    
T  35915261 ccttcagagtcaattctgatggaaaaacattataccgcaacccatatgcttgga 35915208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 595 - 810
Target Start/End: Complemental strand, 35935205 - 35934989
Alignment:
Q  595 acatttgattttactagcaagttaacgagttgagtggacaaaagataaacaaatttaccta-actctcgagtttgacagctttgattctgacaacataat 693  Q
    |||||||||||||||| |||||  | |||| ||||  ||| ||| || |||  |||||||| ||||| |||||||| |  |||||| |||| ||||||||    
T  35935205 acatttgattttactaacaagtatatgagtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataat 35935106  T
Q  694 gtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgacggcaaaacactataccg 793  Q
     ||||||||  ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||| || |||||| |||||||    
T  35935105 atttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcagagtcaactctgatggaaaaacattataccg 35935006  T
Q  794 taacccatattcttgga 810  Q
    ||||| |||| ||||||    
T  35935005 taaccaatatgcttgga 35934989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 683 - 810
Target Start/End: Complemental strand, 35940685 - 35940558
Alignment:
Q  683 gacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgacggcaaa 782  Q
    |||||||||||||||||| |  ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||| || |||    
T  35940685 gacaacataatgtttgaaccacacaggacctggctgttcttcacttgggtatggagcctttcaggagctcggacccttcagagtcaactctgatggaaaa 35940586  T
Q  783 acactataccgtaacccatattcttgga 810  Q
    ||||||||||||||||||||| ||||||    
T  35940585 acactataccgtaacccatatgcttgga 35940558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 35928961 - 35928879
Alignment:
Q  17 ctattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggtataaattgcctcaaac 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35928961 ctattattttgtggagtctccatataactcttccactaaacctttagttttgtggctcaatggaggtataaattgcctcaaac 35928879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 35911627 - 35911552
Alignment:
Q  17 ctattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggtataaattgc 92  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  35911627 ctattattttgtggagtctccatataactcttccactaaacctttagtattatggctcaatggaggtaaaaattgc 35911552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 35935597 - 35935519
Alignment:
Q  18 tattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggtataaattgcctca 96  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||| |||| ||||||    
T  35935597 tattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaatagcctca 35935519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 35916014 - 35915947
Alignment:
Q  17 ctattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggta 84  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  35916014 ctattattttgtggagtctccatataactcttccactaaacctttagtactgtggttcaatggaggta 35915947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 35941148 - 35941076
Alignment:
Q  17 ctattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggtataaat 89  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||| || |||||||||||||||| ||||    
T  35941148 ctattattttgtggagtctccatgtaactcttctactaaacctttagtattatggctcaatggaggtaaaaat 35941076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 35922283 - 35922216
Alignment:
Q  17 ctattattttgtggagtctccgtataactcttccactaaacctttagttttgtggctcaatggaggta 84  Q
    ||||||||||||||| |||||  |||||||||  |||||||| ||| | |||||||| ||||||||||    
T  35922283 ctattattttgtggaatctccacataactcttatactaaacccttaatattgtggcttaatggaggta 35922216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 35915725 - 35915684
Alignment:
Q  281 tttgattgatgacataacttgattttcatagtagtcaaacat 322  Q
    |||||||||||||||||||  |||||||||||||| ||||||    
T  35915725 tttgattgatgacataactacattttcatagtagtgaaacat 35915684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 35922085 - 35922044
Alignment:
Q  282 ttgattgatgacataacttgattttcatagtagtcaaacatg 323  Q
    |||||||||||||||| || |||||||||||||| |||||||    
T  35922085 ttgattgatgacataagttcattttcatagtagtgaaacatg 35922044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 35940852 - 35940804
Alignment:
Q  266 attattagttaatattttgattgatgacataacttgattttcatagtagt 315  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||||||||    
T  35940852 attatcagttaatattt-gattgatgacataacttcatattcatagtagt 35940804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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