View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_11 (Length: 475)
Name: NF3030_low_11
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 34120260 - 34120726
Alignment:
| Q |
1 |
ctaagattagaaaacatagctaaaaataaaattgtgagtgtattgagatacctaaactcaggaggattcttaggccaccgattttcccattggaactgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34120260 |
ctaagattagaaaacatagctaaaaataaaattgtgagtgtattgagatacctaaactcaggaggattcttaggccaccgattttcccattggaactgaa |
34120359 |
T |
|
| Q |
101 |
aagaaggtggtataaaagttggttgttgcacattaaaatcataaatttccttccagtccctaacattttttgtatgctctgcttcaaaatatccaagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34120360 |
aagaaggtggtataaaagttggttgttgcacattaaaatcataaatttccttccagtccctaacattttttgtatgctctgcttcaaaatatccaagcaa |
34120459 |
T |
|
| Q |
201 |
gttaacttcatctcttctcaccttaatcttctcttccaaactaagttcaaaaaatttgtttgcagattcttcaattctctcacgtttatccaaaggcact |
300 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34120460 |
gttaacttcatctcttctcactttaaccttctcttccaaactaagttcaaaaaatttgtttgcagattcttcaattctctcacgtttatccaaaggcact |
34120559 |
T |
|
| Q |
301 |
ttgtgattaataacttgaaagaaaccccattctttacatgcttgaccaatttctttgaccaagttttggatggaaagtgagttggtttcatcatcttggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34120560 |
ttgtgattaataacttgaaagaaaccccattctttacatgcttgaccaatttctttgaccaagttttcgatggaaagtgagttggtttcatcatcttggt |
34120659 |
T |
|
| Q |
401 |
agtttatgggagagagatcaattagagggatgccttcagcaatgattatggaagattttggtctgtg |
467 |
Q |
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| T |
34120660 |
agtttatgggagagagatcaattagagggatgctttcagcaatgattatggaagattttggtctgtg |
34120726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 32717342 - 32717293
Alignment:
| Q |
418 |
tcaattagagggatgccttcagcaatgattatggaagattttggtctgtg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717342 |
tcaattagagggatgccttcagcaatgattatggaagattttggtctgtg |
32717293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 10638269 - 10638318
Alignment:
| Q |
418 |
tcaattagagggatgccttcagcaatgattatggaagattttggtctgtg |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10638269 |
tcaattagagggatgccttcagcaatgattatggaagattttggtatgtg |
10638318 |
T |
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