View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_12 (Length: 460)
Name: NF3030_low_12
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_12 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Original strand, 8402230 - 8402685
Alignment:
| Q |
3 |
tcgagtgagatgaacttacgaagaccgttagttataattagttgctaattggttatattagttctggtagaat----atataaagtatattctactattc |
98 |
Q |
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| T |
8402230 |
tcgaatgagctgaacttacggagaccgttagttataattagttgctaattggttatattagttctcgtagaatgactatataaagtatattctactattc |
8402329 |
T |
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| Q |
99 |
tcttcattggactctaccatacttctaattctcaacaatgtcgatagctcatgctggttattatgagatgtagtgtttgatgaaatgttaggactcaggg |
198 |
Q |
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| T |
8402330 |
tcttcattggactctaccatacttctaattctcaacaatgtcaatagctcatgctggttattatgagatgtagtgtttgatgaaatgttaggactcaagg |
8402429 |
T |
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| Q |
199 |
tgttatgttgcttataatttcttagcaaaatattaattcttttcgtagtcccaacttgaagggatgatagcgaacaattagg-aagca------tataag |
291 |
Q |
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| T |
8402430 |
tgttatgttgcttataatttcttagcaaaatattaattcttttcgtagtcccaacttgaagggatgatagcgaacagttaggaaagcatataattataag |
8402529 |
T |
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| Q |
292 |
tctttcaggttagatttagaaaagaacatcctaagaacttcaaaagagtttcaatgtcatgtttcc--atttcaatggaaatactattttttcaacttct |
389 |
Q |
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| T |
8402530 |
cctttcaagttagatttagaaaagaacatcctaagaactttaaaagagtttcaatgtcatgtttccatatttcaatggaaatactaatttttcaacttca |
8402629 |
T |
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| Q |
390 |
aacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaat |
445 |
Q |
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| T |
8402630 |
aacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaat |
8402685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 8444284 - 8444330
Alignment:
| Q |
87 |
attctactattctcttcattggactctaccatacttctaattctcaa |
133 |
Q |
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| T |
8444284 |
attctactattctcttcattggactctaccaaacttctaattctcaa |
8444330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 8280014 - 8279952
Alignment:
| Q |
382 |
caacttctaacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaa |
444 |
Q |
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| T |
8280014 |
caacttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaa |
8279952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 8262366 - 8262431
Alignment:
| Q |
379 |
tttcaacttctaacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaa |
444 |
Q |
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| T |
8262366 |
tttcagcttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaa |
8262431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 65629 - 65583
Alignment:
| Q |
87 |
attctactattctcttcattggactctaccatacttctaattctcaa |
133 |
Q |
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| T |
65629 |
attctactattctcttcattggactctaccaaacttctaattctcaa |
65583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 65748 - 65686
Alignment:
| Q |
31 |
tagttataattagttgctaattggttatattagttctggtagaa----tatataaagtatatt |
89 |
Q |
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| T |
65748 |
tagtcataattatttgctaattggttatattagttatcgtagaatgactatataaagtatatt |
65686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 31842814 - 31842850
Alignment:
| Q |
29 |
gttagttataattagttgctaattggttatattagtt |
65 |
Q |
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| T |
31842814 |
gttagttataattagttgttatttggttatattagtt |
31842850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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