View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_13 (Length: 457)
Name: NF3030_low_13
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 10371511 - 10371965
Alignment:
| Q |
1 |
tcagctaatgggtgtaacgctagacataaagacattcaacatgaacatgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10371511 |
tcagctaatgggtgtaacgctagacataaagacattcaacatgaacatgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacgtg |
10371610 |
T |
|
| Q |
101 |
gatttcatggagaggtggtttttcgctccgacaattgtaacatataataccgtcactgaagtttatgacacagcatgagaaattgagaagatttatatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10371611 |
gatttcatggagaggtggtttttcgctccgacaattgtaacatataatatcgtcactgaagtttatgacacagcatgagaaattgagaagatttatatac |
10371710 |
T |
|
| Q |
201 |
actccaaaaacttaattccatttttgctgtgggggtgacggttgaaattacatttcctgctgtcaaaagaagttttgattgtac-----tgaaggaattg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10371711 |
actccaaaaacttaattccatttttgctgtgggggtgacggttgaaattacatttcctgctgtcaaaagaagttttgattgtacatagttgaaggaattg |
10371810 |
T |
|
| Q |
296 |
attgtaaaaagaagttttggtcctgactttctagattttgtagcaggttttgtattaatcccaatcaaaaatattttttctatagcttaaaatatattaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10371811 |
attgtaaaaagaagttttggtcctgactttctagattttgtagcaggttttgtattaatcccaatcaaaaatattttttctatagcttaaaatatattaa |
10371910 |
T |
|
| Q |
396 |
agttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
450 |
Q |
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| T |
10371911 |
agttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
10371965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 10489401 - 10489250
Alignment:
| Q |
44 |
aacatgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacg---tggatttcatggagaggtggtttttcgctccgacaattgtaa |
140 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||| ||||| || |||| | ||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
10489401 |
aacatgatgataaagtcgtatggcaaagcaggcatgtacgataagatgaagagtgtgatggatttcatggagaggaggtttttcgctccaacaattgtaa |
10489302 |
T |
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| Q |
141 |
catataataccgtcactgaagtttatgacacagcatgagaaattgagaagat |
192 |
Q |
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| T |
10489301 |
catataataccgtcattgaagtttatggcaaagccggagaaattgagaagat |
10489250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 9853803 - 9853703
Alignment:
| Q |
45 |
acatgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacg-tggatttcatggagaggtggtttttcgctccgacaattgtaacat |
143 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
9853803 |
acatgatgataaagtcctagggcaaagcaggcatgtatgataaaataaagactgacggatttcatggagaggaggttttttgctccgacaattgtaacat |
9853704 |
T |
|
| Q |
144 |
a |
144 |
Q |
| |
|
| |
|
|
| T |
9853703 |
a |
9853703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 9843106 - 9843007
Alignment:
| Q |
48 |
tgatgataaggtcctatggcaaagcaggcatgtatgataaaatcaagaacgt---ggatttcatggagaggtggtttttcgctccgacaattgtaacata |
144 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
9843106 |
tgatgataaagtcctatggcaaagcaggcatgtatgataaaataaagacagtgacggatttcatggagcggaggttttttgctccgacaattgtaacata |
9843007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 10093919 - 10093841
Alignment:
| Q |
372 |
tttctatagcttaaaatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
450 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||| |
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| T |
10093919 |
tttctatagcttaaaacatattaaagttcaattgtgtgaaaataaatatgcatgttagaccagtttctattttctgctc |
10093841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 10200801 - 10200723
Alignment:
| Q |
372 |
tttctatagcttaaaatatattaaagttcaattatgtgaaaatgaatatgcatgctagatcagtttctattctctgctc |
450 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||||| |
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| T |
10200801 |
tttctatagcttaaaacatattaaagttcaattgtgtgaaaataaatatgcatgttagaccagtttctattttctgctc |
10200723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 10100675 - 10100633
Alignment:
| Q |
331 |
ttttgtagcaggttttgtattaatcccaatcaaaaatattttt |
373 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
10100675 |
ttttgtatcaggttttgtatttttcccaatcaaaaatattttt |
10100633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 10208584 - 10208542
Alignment:
| Q |
331 |
ttttgtagcaggttttgtattaatcccaatcaaaaatattttt |
373 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
10208584 |
ttttgtatcaggttttgtatttttcccaatcaaaaatattttt |
10208542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32311868 - 32311911
Alignment:
| Q |
1 |
tcagctaatgggtgtaacgctagacataaagacattcaacatga |
44 |
Q |
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| T |
32311868 |
tcagctaatgggtgtaacgccagacataaagacattcaacatga |
32311911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 32311998 - 32312053
Alignment:
| Q |
100 |
ggatttcatggagaggtggtttttcgctccgacaattgtaacatataataccgtca |
155 |
Q |
| |
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|||||||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||| |
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| T |
32311998 |
ggatttcatggagaggaggtttttcgttccaacagttgtaacatataacaccgtca |
32312053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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