View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_15 (Length: 449)
Name: NF3030_low_15
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4212489 - 4212692
Alignment:
| Q |
1 |
aagacaaagccaaatttggattactattac-------ttggtaagtaagaaagggatattccagtaatttaacattaataaccagaactttcttcgaaat |
93 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
4212489 |
aagacaaagccaaatttggattactattacatattacttggtaagtaagaaagggacattctagtaatt-aacattaataaccagaactttcttcgaaat |
4212587 |
T |
|
| Q |
94 |
tatcctcccattcccatctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtattatttgtttctgcattcgc |
193 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4212588 |
tatcctccc------atctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtattatttgtttctgcattcgc |
4212681 |
T |
|
| Q |
194 |
attcgcattcg |
204 |
Q |
| |
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||||||||||| |
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| T |
4212682 |
attcgcattcg |
4212692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 4212725 - 4212833
Alignment:
| Q |
239 |
gccatggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcctcgcgttcagaatcacc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4212725 |
gccatggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcctcgcgttcagaatcacc |
4212824 |
T |
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| Q |
339 |
tcaaacagg |
347 |
Q |
| |
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||||||||| |
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| T |
4212825 |
tcaaacagg |
4212833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 31161581 - 31161475
Alignment:
| Q |
241 |
catggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcctcgcgttcagaatcacctc |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
31161581 |
catggattcattcgcttcgttcttcgattcaacacctcgatggaatttcaatactctcaaaaacttcaatcagatttctcccagcgtttagaatcacctc |
31161482 |
T |
|
| Q |
341 |
aaacagg |
347 |
Q |
| |
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||||||| |
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| T |
31161481 |
aaacagg |
31161475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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