View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_17 (Length: 425)
Name: NF3030_low_17
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 5177581 - 5177976
Alignment:
| Q |
17 |
cacaaaagaaagaataaccaaaaatgtgagagtatactcactgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccat |
116 |
Q |
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| T |
5177581 |
cacaaaagaaagaataaccaaaaatgtgagagtatactcactgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccat |
5177680 |
T |
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| Q |
117 |
cttccatgttgatggtgtctgctacaaagataataatcagagccaattttatttttcatatataaatcatatattaaaattaaattagtgcaatgcatgt |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5177681 |
cttccatgttgatgatgtctgctacaaagataataatcagagccaattttatttttcatatataaatcatatattaaa-ttaaattagtgcaatgcatgt |
5177779 |
T |
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| Q |
217 |
gatgttagactcaccttgttactcctctatacatggaagcccctcttgagaatccactgcttttcctgattttacaaagttaaattatatggttatgtat |
316 |
Q |
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| T |
5177780 |
gatgttagactcaccttgttactcctctatacatggaagcccctcttgagaatccactgcttttcctgattttacaaagttaaattatatggttatgtat |
5177879 |
T |
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| Q |
317 |
attgttaacatatggttttcaactgcataatgatggagatgaaaatatttgtaccttcttaaatgagcaacgtattctagtctagtcattttcttca |
413 |
Q |
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| T |
5177880 |
attgttaacatatggttttcaactgcataatgattgagatgcaaatatttgtaccttcttaaatgagcaacgtattctagtctagtcattttcttca |
5177976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 40190594 - 40190506
Alignment:
| Q |
52 |
actcactgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatggtgtctgcta |
140 |
Q |
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| T |
40190594 |
actcactgaaagttccaagatatagatctttattaccagccactctaccaattctagcttgccatcttccatgttggtgatgtctgcta |
40190506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 40190401 - 40190344
Alignment:
| Q |
229 |
accttgttactcctctatacatggaagcccctcttgagaatccactgcttttcctgat |
286 |
Q |
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| T |
40190401 |
accttgttactcctctgtacatggatgcccctcttgagaatccactgctttttctgat |
40190344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 24562109 - 24562180
Alignment:
| Q |
56 |
actgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttg |
127 |
Q |
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| T |
24562109 |
actgaaagttcccaagtatagatctttatttcctgcaactctgccaatccttgcttgccatcttccatgttg |
24562180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 30618689 - 30618771
Alignment:
| Q |
56 |
actgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatggtgtctgc |
138 |
Q |
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|||||||||||| || ||||||||||| || || |||||||| || || | |||||||||||| ||||||||||| ||||||| |
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| T |
30618689 |
actgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtctgc |
30618771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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