View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_20 (Length: 389)
Name: NF3030_low_20
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 175 - 375
Target Start/End: Original strand, 24905963 - 24906145
Alignment:
| Q |
175 |
gtttctgattttgtacaaaaacaaaattaatgttgcataagatatatcatatggctcatatataataaactacaaaaactcaagtacttaatacatgata |
274 |
Q |
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| T |
24905963 |
gtttctgattttgtacaaaaacaaaattaatgttgcataagatatatcatatggctcatatataataaactacaaaaactcaagtactt----------- |
24906051 |
T |
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| Q |
275 |
tagtattgaaccatagatcaaaatattgtgctatatgaaagagctagtgctaatttcatgaaacctaacaacttaaggttcaaaagggttattgttgtga |
374 |
Q |
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| T |
24906052 |
-------gaaccatagatcaaaatattgtgctatatgaaagagctagtgctaatttcatgaaacctaacaacttaaggttcaaaagggttattgttgtga |
24906144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 24905833 - 24905898
Alignment:
| Q |
41 |
gtcttctttcaaaggataaatacaattaccaatgaagccacaaacacatgaactaaaacaactatg |
106 |
Q |
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| T |
24905833 |
gtcttctttcaaaggataaatacaatgaccaatgaagccacaaacacatgaactaaaacaactatg |
24905898 |
T |
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