View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_22 (Length: 378)
Name: NF3030_low_22
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 37305605 - 37305908
Alignment:
| Q |
16 |
atgagtcatgttttggaatagtcatttgtaggaagtttattttggaatagtcgtcaagcaaacttaggaaggaatgtacttatgtcatgcaattcctgcg |
115 |
Q |
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| T |
37305605 |
atgagtcatgttttggaatagtcatttgtaggaagtttattttggaatagtcgtcaagcaaacttaggaaggaatgtacttatgtcatgcaattcctgcg |
37305704 |
T |
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| Q |
116 |
tgccataatcaacataccttataagcgcgccttacagaattcctgcgtgccataagcaagttatcttccacattctctttcagccctattttacagcann |
215 |
Q |
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| T |
37305705 |
tgccataatcaacataccttataagcgcgccttacagaattcctgcgtgccataagcaagttatcttccacattctctttcagccccattttacagcata |
37305804 |
T |
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| Q |
216 |
nnnnnnncttctaagtagaaggattgtacagtgttataacatttttacagcatacacatgttgtataatgtgttatgttacaaattaaacataagtaaat |
315 |
Q |
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| T |
37305805 |
ttttatt-ttctaagtagaaggattgtacagtgttataacatttttacagcatacacatgttgtataatgtgttatgttacaaattaaacataagtaaat |
37305903 |
T |
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| Q |
316 |
ataac |
320 |
Q |
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||||| |
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| T |
37305904 |
ataac |
37305908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 37305909 - 37305994
Alignment:
| Q |
246 |
gtgttataacatttttacagcatacacatgttgtataatgtgttatgttacaaattaaacataagtaaatataactatgcaactga |
331 |
Q |
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| T |
37305909 |
gtgttataacatttttacagcatacacatgttgtataatgtgttatgttacaaattaaacataagtaaatataactatgcaactga |
37305994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 37306012 - 37306058
Alignment:
| Q |
318 |
aactatgcaactgattaaccaattaatttggctcaaatggttaatga |
364 |
Q |
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| T |
37306012 |
aactatgcaactgattaaccaattaatttggctcaaatggttaatga |
37306058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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