View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_25 (Length: 328)
Name: NF3030_low_25
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 34677073 - 34676775
Alignment:
| Q |
16 |
ctgtgcatacgtaggatttaaacataatcagacattttgaatgttctgtaagctataatcagatgaaattttcattactgtcaacttataatataatggt |
115 |
Q |
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| T |
34677073 |
ctgtgcatacgtaggatttaaacataatcagacattttgaatgttctgtaagctataatcaaatgaaattttcattactgtcaacttataatataatggt |
34676974 |
T |
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| Q |
116 |
ggttgaaatgttacttagatggaatagcttacctaattttgttcccaccagcacaataggcacatttggagcataatgtctcagctcagatatccactgt |
215 |
Q |
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| T |
34676973 |
ggttgaaatgttacttagatggaatagcttacctaattttgttcccaccagcacaataggcacatttggagcataatgtctcagctcagatatccactgt |
34676874 |
T |
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| Q |
216 |
taataaactaaaaatgttattacagtaccaaaaaat--tagagatgtaaatctaacttataaggtaatgtatagaggaaaaaacctttttggaaatgtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676873 |
taataaactaaaaatgttattacagtaccaaaaaataatagagatctaaatctaacttataaggtaatgtatagaggaaaaaacctttttggaaatgtt |
34676775 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 27710827 - 27710751
Alignment:
| Q |
79 |
tgaaattttcattactgtcaacttataatataatggtggttgaaatgttacttagatggaatagcttacctaatttt |
155 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27710827 |
tgaaattttcattaccgtcaacttataatataatggtggttgaaatgttacttagatggaatagcttacctaatttt |
27710751 |
T |
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