View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_low_29 (Length: 315)

Name: NF3030_low_29
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_low_29
NF3030_low_29
[»] chr5 (9 HSPs)
chr5 (1-301)||(12531356-12531656)
chr5 (1-301)||(12546963-12547263)
chr5 (3-287)||(9894527-9894804)
chr5 (4-295)||(9866624-9866916)
chr5 (44-152)||(9869994-9870102)
chr5 (3-90)||(12538673-12538760)
chr5 (63-181)||(38735501-38735619)
chr5 (204-287)||(9869893-9869976)
chr5 (1-32)||(12537076-12537107)
[»] chr2 (5 HSPs)
chr2 (4-295)||(13576218-13576509)
chr2 (32-286)||(34571441-34571695)
chr2 (68-292)||(34578945-34579169)
chr2 (68-292)||(34584694-34584918)
chr2 (39-292)||(34562654-34562910)
[»] chr7 (4 HSPs)
chr7 (7-301)||(3929931-3930225)
chr7 (39-295)||(21317444-21317700)
chr7 (7-301)||(3928579-3928873)
chr7 (9-53)||(21320195-21320239)
[»] chr8 (9 HSPs)
chr8 (8-301)||(43479645-43479938)
chr8 (33-292)||(25865573-25865832)
chr8 (8-298)||(38799362-38799652)
chr8 (8-298)||(38821865-38822155)
chr8 (39-292)||(41943817-41944070)
chr8 (42-286)||(26592047-26592291)
chr8 (8-115)||(38807046-38807153)
chr8 (42-142)||(44343978-44344078)
chr8 (210-292)||(44343874-44343958)
[»] scaffold0197 (1 HSPs)
scaffold0197 (39-295)||(30882-31137)
[»] chr4 (7 HSPs)
chr4 (9-295)||(24860416-24860702)
chr4 (35-271)||(34748649-34748885)
chr4 (63-181)||(53290720-53290838)
chr4 (180-259)||(40035830-40035909)
chr4 (171-221)||(44771103-44771153)
chr4 (48-139)||(40036062-40036153)
chr4 (180-259)||(40045155-40045234)
[»] chr1 (4 HSPs)
chr1 (33-142)||(7594127-7594236)
chr1 (108-189)||(17769233-17769314)
chr1 (180-270)||(7594402-7594492)
chr1 (108-186)||(1539185-1539263)
[»] chr3 (1 HSPs)
chr3 (108-189)||(27440873-27440954)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 12531656 - 12531356
Alignment:
Q  1 accaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531656 accaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatc 12531557  T
Q  101 ctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttca 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  12531556 ttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttca 12531457  T
Q  201 cgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatctgt 300  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  12531456 cgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgt 12531357  T
Q  301 g 301  Q
    |    
T  12531356 g 12531356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 12546963 - 12547263
Alignment:
Q  1 accaaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatc 100  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12546963 accaaatctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatc 12547062  T
Q  101 ctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttca 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  12547063 ttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttca 12547162  T
Q  201 cgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatctgt 300  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  12547163 cgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgt 12547262  T
Q  301 g 301  Q
    |    
T  12547263 g 12547263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 9894804 - 9894527
Alignment:
Q  3 caaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcct 102  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||| | |||||||||||| || || | ||||||||| |    
T  9894804 caaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatctt 9894706  T
Q  103 caaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacg 202  Q
    ||||||||| ||||| | |||||||| || ||||||||| ||||||||||||||| || ||||| |  ||| | || ||| |||||||||| ||||| |     
T  9894705 caaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagtcttg-aatcctgagcaatttccct 9894607  T
Q  203 aacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttcca 287  Q
     ||||||||||| || |||||||||||||| ||||     || ||| |||| || || |||||||||||||| ||||| ||||||    
T  9894606 cacaagtctctgaaacggaagcttccttattagaa-----gtgctcctctggtaattacggatctcacgaagagcaaccgttcca 9894527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 9866624 - 9866916
Alignment:
Q  4 aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctc 103  Q
    ||||||||||||||| ||||||||||||   ||||||||| || |||| |||||| |||||||| |||||||||||||| ||||| || |||||||| ||    
T  9866624 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttc 9866723  T
Q  104 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacga 203  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||| |||| || | ||| |  ||||| || ||||||||||  ||| |||| |      
T  9866724 aaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagtcttgaaatccttcgcg-tttccctc 9866822  T
Q  204 aca--agtctctggaatggaagcttccttatcagaagctcggtactcttctgata--cttgcggatctcacgaagtgcaacagttccaggacggaa 295  Q
    | |  |||||||| || |||||||||||||  ||||||||  | ||||| || ||  ||| |||||||||||||| ||||| ||||||||||||||    
T  9866823 agatcagtctctgaaacggaagcttcctta--agaagctcaatgctcttttggtactcttacggatctcacgaagcgcaacggttccaggacggaa 9866916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 9870102 - 9869994
Alignment:
Q  44 aatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaaga 143  Q
    ||||||||||||||| |||||||| |||||||||||||| || || |||||| |||| | |||||||||||||| |||||||||| ||||||||||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaaga 9870003  T
Q  144 gcagaaaca 152  Q
     || |||||    
T  9870002 ccataaaca 9869994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 12538760 - 12538673
Alignment:
Q  3 caaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacaga 90  Q
    ||||||||||| |||| |||||||||| |||||| |||||||||| | ||||||||||||||||| |||||||||||||| |||||||    
T  12538760 caaatctaagcactcttgcctctgattatgcgagtgagttgaatacctttaggcatgatagtaactctcttagcatgaatagcacaga 12538673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 38735619 - 38735501
Alignment:
Q  63 gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt 162  Q
    |||||||||||||||||||| | ||| || |||||||| ||||||||||||||||||||| |||||    ||| ||||||||||||||||||  |||| |    
T  38735619 gtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctat 38735520  T
Q  163 ggaatcgaagatctgtttt 181  Q
    |||| |  |||||||||||    
T  38735519 ggaacctgagatctgtttt 38735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 9869976 - 9869893
Alignment:
Q  204 acaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttcca 287  Q
    ||||||||||  || |||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||    
T  9869976 acaagtctctaaaacggaagcttccttattagaagctcagtgctcttctggtacttacggatctcacgaagagcaacggttcca 9869893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 12537107 - 12537076
Alignment:
Q  1 accaaatctaagccctctcgcctctgattctg 32  Q
    ||||||||||||||||||||||||||||||||    
T  12537107 accaaatctaagccctctcgcctctgattctg 12537076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 13576509 - 13576218
Alignment:
Q  4 aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctc 103  Q
    ||||||||||||| |||||||||||||| |  || |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  13576509 aaatctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctc 13576410  T
Q  104 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||| ||||| |||    
T  13576409 aaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcga 13576310  T
Q  204 acaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaa 295  Q
    || | ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || || ||||||||||||||    
T  13576309 accaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcggatttcacgaagagcgacggttccaggacggaa 13576218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 286
Target Start/End: Original strand, 34571441 - 34571695
Alignment:
Q  32 gcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagca 131  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| ||     
T  34571441 gcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgct 34571540  T
Q  132 gcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttcctta 231  Q
    ||||| ||||| ||   ||| |||  ||| |||||||| | ||| || |||||||||||||| |||||||||||||| | |||||||||||| || |  |    
T  34571541 gcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacgga 34571640  T
Q  232 tcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttcc 286  Q
    ||| ||| |||||||||||||||||||| || ||||||||||| ||||| |||||    
T  34571641 tcaaaagttcggtactcttctgatacttacgtatctcacgaagagcaactgttcc 34571695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 292
Target Start/End: Original strand, 34578945 - 34579169
Alignment:
Q  68 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 167  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34578945 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34579044  T
Q  168 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct 267  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || |  |||| ||| ||||||| |||||||||||| || ||||    
T  34579045 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct 34579144  T
Q  268 cacgaagtgcaacagttccaggacg 292  Q
    ||||||| ||||| |||||||||||    
T  34579145 cacgaagagcaactgttccaggacg 34579169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 292
Target Start/End: Original strand, 34584694 - 34584918
Alignment:
Q  68 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 167  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34584694 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34584793  T
Q  168 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct 267  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || |  |||| ||| ||||||| |||||||||||| || ||||    
T  34584794 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct 34584893  T
Q  268 cacgaagtgcaacagttccaggacg 292  Q
    ||||||| ||||| |||||||||||    
T  34584894 cacgaagagcaactgttccaggacg 34584918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 292
Target Start/End: Original strand, 34562654 - 34562910
Alignment:
Q  39 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 138  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| |    
T  34562654 agttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct 34562753  T
Q  139 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaat---cctgagcgatttcacgaacaagtctctggaatggaagcttccttatcag 235  Q
    |||| ||   ||| |||   || |||||||  | ||| |  |||| ||   | ||||| |||||||||||||| | ||||||||||||||| |  ||||     
T  34562754 gaagtgcgagaaccgcatgactctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaagacgctggaatggaagcttacggatcaa 34562853  T
Q  236 aagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacg 292  Q
    ||| |||| ||||||||| || || || ||||| ||||| ||||| |||||||||||    
T  34562854 aagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacg 34562910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 3929931 - 3930225
Alignment:
Q  7 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaa 106  Q
    |||||||||| |||||||||||||| |  || |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||    
T  3929931 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaa 3930030  T
Q  107 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaaca 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||     
T  3930031 caaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaacc 3930130  T
Q  207 agtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatctgtg 301  Q
    | ||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  3930131 aatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctggacggaatctgtg 3930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 39 - 295
Target Start/End: Complemental strand, 21317700 - 21317444
Alignment:
Q  39 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 138  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  21317700 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttctt 21317601  T
Q  139 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 238  Q
    |||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||||||    
T  21317600 gaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaag 21317501  T
Q  239 ctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaa 295  Q
    ||| || |||||||| ||||||||||| |||||||| || || ||||| ||||||||    
T  21317500 ctcagtgctcttctggtacttgcggatttcacgaagcgccacggttccgggacggaa 21317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 3928579 - 3928873
Alignment:
Q  7 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaa 106  Q
    ||||||| |||||||  ||||||||||  || |||| ||||||||||||||  |||||||| |||||||||||||| ||||| |||||  |||| |||||    
T  3928579 tctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaa 3928678  T
Q  107 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaaca 206  Q
    ||||||||||| | | ||||||||   ||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||| ||||     
T  3928679 caaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaacc 3928778  T
Q  207 agtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatctgtg 301  Q
    | ||| | ||| ||||| ||||| || |||||||| ||  |||| |||||||| | ||| ||||| | ||| || ||||| || | |||||||||    
T  3928779 aatcttttgaaaggaagtttcctaatgagaagctcagtgatcttttgatacttcctgatttcacgcaatgcgactgttcctggtctgaatctgtg 3928873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 21320239 - 21320195
Alignment:
Q  9 taagccctctcgcctctgattctgcgagcgagttgaatatcctta 53  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  21320239 taagccctctcacctctgattatgcaagcaagttgaatatcctta 21320195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 43479645 - 43479938
Alignment:
Q  8 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaac 107  Q
    |||||||||||||||||| ||||| |  || |||||||||||||||||||| || |||||||||||||||||||| || || || |||||||| ||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaa 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| |  ||||| ||||||||||||||||||||||| | ||| |    
T  43479745 aaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaacca 43479844  T
Q  208 gtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatctgtg 301  Q
     ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43479845 atctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacggaatctgtg 43479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 292
Target Start/End: Complemental strand, 25865832 - 25865573
Alignment:
Q  33 cgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcag 132  Q
    ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||| |||||||    
T  25865832 cgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcag 25865733  T
Q  133 cttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttat 232  Q
    |||| ||||| |||  |||||||   || || ||||  ||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |  ||    
T  25865732 cttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggat 25865633  T
Q  233 cagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacg 292  Q
    || |||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  25865632 caaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttccaggacg 25865573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 38799652 - 38799362
Alignment:
Q  8 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaac 107  Q
    |||||||||||| ||||||||||| |  || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || || |||||     
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38799553  T
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaa 207  Q
    | |||||| |  |||||||||||||||||||||||||| ||||| || ||||| |||||||  |||||||| |||||||| ||||| |||||||||||||    
T  38799552 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38799453  T
Q  208 gtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatct 298  Q
    | |  ||||||||||| || |  || |||||||| || |||||||||||||| |||||||| |  |  |||||||||||||| | ||||||    
T  38799452 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccaggtctgaatct 38799362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 38821865 - 38822155
Alignment:
Q  8 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaac 107  Q
    |||||||||||| ||||||||||| |  || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || || |||||     
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38821964  T
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaa 207  Q
    | |||||| |  |||||||||||||||||||||||||| ||||| || ||||| |||||||  |||||||| |||||||| ||||| |||||||||||||    
T  38821965 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38822064  T
Q  208 gtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaatct 298  Q
    | |  ||||||||||| || |  || |||||||| || |||||||||||||| |||||||| |  |  |||||||||||||| | ||||||    
T  38822065 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccaggtctgaatct 38822155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 292
Target Start/End: Complemental strand, 41944070 - 41943817
Alignment:
Q  39 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 138  Q
    |||||||| ||||| ||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| || ||||| |    
T  41944070 agttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcct 41943971  T
Q  139 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 238  Q
    |||| |||  |||||||  ||| |||||||  ||||| || |||||||| ||||| |||||||||||||| |  |||||||||||||| |  |||| |||    
T  41943970 gaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaag 41943871  T
Q  239 ctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacg 292  Q
     || ||||||||||| || || |||||||||||||||||||| || ||||||||    
T  41943870 atcagtactcttctggtatttacggatctcacgaagtgcaacggtaccaggacg 41943817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 286
Target Start/End: Complemental strand, 26592291 - 26592047
Alignment:
Q  42 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 141  Q
    |||||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || || |||||||| |    
T  26592291 tgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 26592192  T
Q  142 gagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctc 241  Q
    | || || ||||||  ||| || || || ||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || ||||| ||    
T  26592191 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttc 26592092  T
Q  242 ggtactcttctgatacttgcggatctcacgaagtgcaacagttcc 286  Q
    ||| |||||||| ||||||||||||||||| ||||| || |||||    
T  26592091 ggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 26592047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 38807153 - 38807046
Alignment:
Q  8 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaac 107  Q
    |||||||||||||||||||||||| |  || |||||||| |||||||||||||||||||| |||||||||||||| || ||  |||| || ||||||||     
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaag 38807054  T
Q  108 aaaccaac 115  Q
    | ||||||    
T  38807053 agaccaac 38807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 44344078 - 44343978
Alignment:
Q  42 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 141  Q
    ||||||||||| ||||| || || ||||||||||||||||| ||||| | ||| |||||||||||||| || || |||||||| ||||| ||||| ||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaa 44343979  T
Q  142 g 142  Q
    |    
T  44343978 g 44343978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 44343958 - 44343874
Alignment:
Q  210 ctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga--tctcacgaagtgcaacagttccaggacg 292  Q
    |||||||| |||||||| |  |||| ||| | |||||||||||||||||| | ||  |||||||||| ||||| |||||||||||    
T  44343958 ctctggaagggaagcttacggatcaaaagtttggtactcttctgatacttacagatctctcacgaagagcaacggttccaggacg 44343874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 39 - 295
Target Start/End: Complemental strand, 31137 - 30882
Alignment:
Q  39 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 138  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  31137 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttctt 31038  T
Q  139 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 238  Q
    |||||||||||||||||||||| |||||||  ||||  |||||||||||||||||||||||||||||||| |  |||||| |||| || |||||||||||    
T  31037 gaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaag 30939  T
Q  239 ctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaa 295  Q
    ||| || |||||||| ||||||||||| |||||||| || || ||||| ||||||||    
T  30938 ctcagtgctcttctggtacttgcggatttcacgaagcgccacggttccgggacggaa 30882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 24860702 - 24860416
Alignment:
Q  9 taagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| |    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  109 aaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaag 208  Q
      ||||| |||||||||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| ||||||||||||||||| ||    
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgag 24860503  T
Q  209 tctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttccaggacggaa 295  Q
     |  ||||||||||| || |  || |||||||| || || || || ||||||||||| || ||||||||||| ||||| ||||||||    
T  24860502 acgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcgaagtgcaacggttccgggacggaa 24860416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 271
Target Start/End: Complemental strand, 34748885 - 34748649
Alignment:
Q  35 agcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagct 134  Q
    |||||| || |||||||||||||||||||| || | ||| ||||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| |||    
T  34748885 agcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgct 34748786  T
Q  135 tcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatca 234  Q
    ||||| || || || || ||   ||| ||||| || ||||| || ||||||||||||||||| |||||||| || | |||||| || || || |  || |    
T  34748785 tcttgcagcgccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatga 34748686  T
Q  235 gaagctcggtactcttctgatacttgcggatctcacg 271  Q
    | || ||||| |||||||| ||||| |||||||||||    
T  34748685 ggagttcggtgctcttctggtacttacggatctcacg 34748649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 53290838 - 53290720
Alignment:
Q  63 gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt 162  Q
    |||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |  ||| |||||||||||||||| |  |||| |    
T  53290838 gtaatcctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctat 53290739  T
Q  163 ggaatcgaagatctgtttt 181  Q
    |||| |  |||||||||||    
T  53290738 ggaacctgagatctgtttt 53290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  180 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt 259  Q
    ||||| |||||||| ||||||||||| |  ||||||||||| |||||||| ||||  ||||| |||||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 44771103 - 44771153
Alignment:
Q  171 agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 221  Q
    ||||| |||||||||||||||||||||||||||||||| |  |||||||||    
T  44771103 agatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatgga 44771153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 40036153 - 40036062
Alignment:
Q  48 tccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttg 139  Q
    ||||| ||||| |||||||| | ||| ||||| || ||||| |  ||||| |||||||| | |||||||||||| ||||||||||| |||||    
T  40036153 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 40045234 - 40045155
Alignment:
Q  180 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt 259  Q
    ||||| |||||||| ||||||||||| |  |||||||| || |||||||| ||||  ||||| ||||||||||| |||||    
T  40045234 ttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtactt 40045155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 7594127 - 7594236
Alignment:
Q  33 cgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcag 132  Q
    ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||| ||||| |    
T  7594127 cgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctg 7594226  T
Q  133 cttcttgaag 142  Q
    |||| |||||    
T  7594227 cttcctgaag 7594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 17769233 - 17769314
Alignment:
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 189  Q
    |||||||||||||||||| ||   |||||||||||||||||||||| ||| || |  ||||| |||||||||||||||||||    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatcct 17769314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 7594402 - 7594492
Alignment:
Q  180 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcac 270  Q
    |||||||| ||||| |||||||| ||||| | ||| ||||||||||| |  |||| |||||| ||||||||||| ||||| ||||||||||    
T  7594402 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 7594492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 1539185 - 1539263
Alignment:
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaat 186  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||| ||| || |  ||||| ||||||||||||||||    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaat 1539263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 27440954 - 27440873
Alignment:
Q  108 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 189  Q
    |||||||||||||||||| ||   |||||||||||||||||||||   || || |  ||||| |||||||||||||||||||    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatcct 27440873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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