View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_low_33 (Length: 292)
Name: NF3030_low_33
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 3030327 - 3030587
Alignment:
| Q |
14 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3030327 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
3030426 |
T |
|
| Q |
114 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3030427 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3030526 |
T |
|
| Q |
214 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3030527 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgc |
3030587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 3021113 - 3021373
Alignment:
| Q |
14 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
113 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3021113 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3021212 |
T |
|
| Q |
114 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
213 |
Q |
| |
|
|||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021213 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3021312 |
T |
|
| Q |
214 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3021313 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgc |
3021373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 3037982 - 3038242
Alignment:
| Q |
14 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
113 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3037982 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3038081 |
T |
|
| Q |
114 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
213 |
Q |
| |
|
|||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3038082 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3038181 |
T |
|
| Q |
214 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3038182 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgc |
3038242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 42553805 - 42553690
Alignment:
| Q |
148 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttg |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| | ||| || |||||||||||||||||||||| |
|
|
| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
|
| Q |
248 |
ctgactctgcatggcg |
263 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
42553705 |
ctgactctgcgtggcg |
42553690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 42553904 - 42553852
Alignment:
| Q |
40 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaa |
92 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
42553904 |
aaggagacaagacatccagtatacagaggagtacgaagaaggaacaacaacaa |
42553852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University