View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_35 (Length: 290)
Name: NF3030_low_35
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 13556127 - 13555856
Alignment:
| Q |
14 |
cattattttggaaatcaccaatagaaaatgattgcagagatcctaatccgggttgaattcgtgaagttaatgttgcgatcgaaagtacaaatgataagaa |
113 |
Q |
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| T |
13556127 |
cattattttggaaatcaccaacagaaaatgattgcagagatcctaatccaggttgaattcgtgaagttagtgttgcgatcgaaagtacaaatgataagaa |
13556028 |
T |
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| Q |
114 |
atagaaattaatagtaacaattattctaattagaggaaggacatgcctcataataaaatgggaatgactcttgtctttgaccaagacaaagttgctctag |
213 |
Q |
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| T |
13556027 |
atagaaattaatagtaacaattattctaattagaggaaggacatgcctcataataaaatgggaatgactcttgtctttgaccaagacaaagttgctctag |
13555928 |
T |
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| Q |
214 |
cctccctccaattaaatgagggtaaaattgaaagaaaaatgttacaccataaaatccaatatttcatctcac |
285 |
Q |
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| T |
13555927 |
cctccctccaattaaatgagggtaaaattgaaagaaaaatgttacaccataaaatccaatatttcatttcac |
13555856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 47 - 285
Target Start/End: Complemental strand, 13534808 - 13534589
Alignment:
| Q |
47 |
gcagagatcctaatccgggttgaattcgtgaagttaatgttgcgatcgaaagtacaaatgataagaaatagaaattaatagtaacaattattctaattag |
146 |
Q |
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| T |
13534808 |
gcagagatcctgatccgcgttgaattcgtgaagttagtgctgcgatcgaaagtacaaatgttaagaaatagaaattaatagtaacaattattctaattag |
13534709 |
T |
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| Q |
147 |
aggaaggacatgcctcataataaaatgggaatgactcttgtctttgaccaagacaaagttgctctagcctccctccaattaaatgagggtaaaattgaaa |
246 |
Q |
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| T |
13534708 |
aggaaggacatgcctc-------------------tcttgtctttgaccaagacaaagtttctctagcctccctccaattaaatgagggtaaaattgaaa |
13534628 |
T |
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| Q |
247 |
gaaaaatgttacaccataaaatccaatatttcatctcac |
285 |
Q |
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| T |
13534627 |
gaaaaatgttacaccataaaatccaatatttcatttcac |
13534589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 13550569 - 13550473
Alignment:
| Q |
75 |
tgaagttaatgttgcgatcgaaagtacaaatgataagaaatagaaattaatagtaacaattattctaattagaggaaggacatgcctcataataaaa |
171 |
Q |
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| T |
13550569 |
tgaagttagtgatgcgatcgaaagtacaaatgataagaaatagaaattaatagtaacaattattctaattaaagaaaggacatgtctcataagaaaa |
13550473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 21769917 - 21769993
Alignment:
| Q |
47 |
gcagagatcctaatccgggttgaattcgtgaagttaatgttgcgatcgaaagtacaaatgataagaaatagaaatta |
123 |
Q |
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| T |
21769917 |
gcagagatcctgatccgtgttgaattcgtaaagttagtgctgcgatcgaaagtacaaatgataagaaatagaaatta |
21769993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 13549064 - 13548977
Alignment:
| Q |
165 |
aataaaatgggaatgactc-ttgtctttgaccaagacaaagttgctctagcctccctccaattaaat--gagggtaaaattgaaagaa |
249 |
Q |
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| T |
13549064 |
aataaaatgggaatgactccttgtcattgacccggacaaagttgtactagcctcccttcaattaaatgagagggtaaaattggaagaa |
13548977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 21771325 - 21771360
Alignment:
| Q |
136 |
attctaattagaggaaggacatgcctcataataaaa |
171 |
Q |
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| T |
21771325 |
attctaattagaggaaggacatgcctcataataaaa |
21771360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 39951822 - 39951794
Alignment:
| Q |
232 |
agggtaaaattgaaagaaaaatgttacac |
260 |
Q |
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| T |
39951822 |
agggtaaaattgaaagaaaaatgttacac |
39951794 |
T |
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