View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_36 (Length: 289)
Name: NF3030_low_36
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 26546178 - 26546290
Alignment:
| Q |
17 |
atggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaagacaaagaatcacaatagcatactc |
116 |
Q |
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| T |
26546178 |
atggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtcttagtagtaaagtttgagagagaagacaaagaatcacaatagcatactc |
26546277 |
T |
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| Q |
117 |
attagcatacatg |
129 |
Q |
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| T |
26546278 |
attagcatacatg |
26546290 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 26551908 - 26551984
Alignment:
| Q |
17 |
atggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaaga |
93 |
Q |
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| T |
26551908 |
atggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaaga |
26551984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 26546389 - 26546436
Alignment:
| Q |
228 |
cgtcgtggttcaacgttgttcatgttctcgtctaattatgagttcgtt |
275 |
Q |
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| T |
26546389 |
cgtcgtggttcaacgttgttcatgttctcgtttaattatgagttcgtt |
26546436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 26552257 - 26552296
Alignment:
| Q |
90 |
aagacaaagaatcacaatagcatactcattagcatacatg |
129 |
Q |
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| T |
26552257 |
aagacaaataatcacaatagcatactcattagcatacatg |
26552296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 35037386 - 35037312
Alignment:
| Q |
17 |
atggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaagacaaa |
97 |
Q |
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| T |
35037386 |
atggagaacgagtggagttgatgtgcgaaaga------ggagttttagatctgagtgatgaagttcaagagagaagacaaa |
35037312 |
T |
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