View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_38 (Length: 285)
Name: NF3030_low_38
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 8778628 - 8778429
Alignment:
| Q |
11 |
cacagatacaaatctaacatattatttctatttctacnnnnnnnnccttcattggtgaatgtgcataaaccatttaaacttgttaatgtgatc------- |
103 |
Q |
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| T |
8778628 |
cacagatacaaatctaacatattatttctatttctacttttttttccttcattggtgaatgtgcataaaccatttaaacttgttgatgtgatcatatgag |
8778529 |
T |
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| Q |
104 |
-tttgttccactaattggctcattcctctcaaccttaaaaagcaaaacggtgatgggaaatactcatctgtctggacattgttaatttaaaataaatagt |
202 |
Q |
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| T |
8778528 |
ctttgttccactaattggctcattcctctcaaccttaaaa-gcaaaacggcgatgggaaatactcatctgtctggacattgttaattaaaaataaatagt |
8778430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 8778397 - 8778364
Alignment:
| Q |
235 |
gctggactccttttggcattatgtggctcatgtt |
268 |
Q |
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| T |
8778397 |
gctggactccttttggcattatgtggctcatgtt |
8778364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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