View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_39 (Length: 282)
Name: NF3030_low_39
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_39 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: scaffold0349 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 18028 - 18262
Alignment:
| Q |
38 |
ttaagttattcttgtgtaaaaacact-----gccaaatcacttttcttagacagaacttgtgtagtagcaacgtcatatgtatgtatgattaatttgctt |
132 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
18028 |
ttaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgattaatttgctt |
18127 |
T |
|
| Q |
133 |
ttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaaattaattagtgtttgattat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18128 |
ttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaaattaattagtgtttgattat |
18227 |
T |
|
| Q |
233 |
taactatgataacatgacattttgtatttcaatgt |
267 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
18228 |
taactatgataacatgacattttgtatttcaatgt |
18262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 27713916 - 27713682
Alignment:
| Q |
38 |
ttaagttattcttgtgtaaaaacact-----gccaaatcacttttcttagacagaacttgtgtagtagcaacgtcatatgtatgtatgattaatttgctt |
132 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
27713916 |
ttaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgattaatttgctt |
27713817 |
T |
|
| Q |
133 |
ttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaaattaattagtgtttgattat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27713816 |
ttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaaattaattagtgtttgattat |
27713717 |
T |
|
| Q |
233 |
taactatgataacatgacattttgtatttcaatgt |
267 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
27713716 |
taactatgataacatgacattttgtatttcaatgt |
27713682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 26890781 - 26890927
Alignment:
| Q |
39 |
taagttattcttgtgtaaaaacact-----gccaaatcacttttcttagacagaacttgtgtagtagcaacgtcatatgtatgtatgattaatttgcttt |
133 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| |||||| ||||||||||| ||||| |||| | || |||||||||||||||||||||||| |
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| T |
26890781 |
taagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaacacatgtatgtatgattaatttgcttt |
26890880 |
T |
|
| Q |
134 |
taataatacaagagtatgtacatattgtgataccgacagatgtttca |
180 |
Q |
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||| | ||||||||| ||||||||||||||||| |||||||| |||| |
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| T |
26890881 |
taagagtacaagagtttgtacatattgtgatactgacagatggttca |
26890927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 26853993 - 26854104
Alignment:
| Q |
39 |
taagttattcttgtgtaaaaaca-----ctgccaaatcacttttcttagacagaacttgtgtagtagcaacgtcatatgtatgtatgattaatttgcttt |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||| |||| |||| || || |||||||||||||||| |||| |
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| T |
26853993 |
taagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaacttgcgtaggagcagaaacacatatatgtatgattaatttccttt |
26854092 |
T |
|
| Q |
134 |
taataatacaag |
145 |
Q |
| |
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|| |||||||| |
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| T |
26854093 |
tagaaatacaag |
26854104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
| Q |
120 |
gattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagat |
174 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| |
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| T |
27651898 |
gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat |
27651844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 29269782 - 29269548
Alignment:
| Q |
38 |
ttaagttattcttgtgtaaaaacact-----gccaaatcacttttcttagacagaacttgtgtagtagcaacgtcatatgtatgtatgattaatttgctt |
132 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
29269782 |
ttaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatgtatgcatgattaatttgctt |
29269683 |
T |
|
| Q |
133 |
ttaataatacaagagtatgtacatattgtgataccgacagatgtttcaaccaaatcactgtccaatgatccatttctcaaattaattagtgtttgattat |
232 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29269682 |
ttaataatacaagagtatgtagatattgtgataccgactgatgtttcaacgaaacctctgtccaatgatccatttctcaaattaaatagtgtttgattat |
29269583 |
T |
|
| Q |
233 |
taactatgataacatgacattttgtatttcaatgt |
267 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
29269582 |
taactatgataacatgacattttgtatttcaatgt |
29269548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 18650368 - 18650303
Alignment:
| Q |
110 |
atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatg |
175 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
18650368 |
atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcatatcgacagatg |
18650303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 18682786 - 18682721
Alignment:
| Q |
110 |
atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatg |
175 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||| ||||| |
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| T |
18682786 |
atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatg |
18682721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 18718587 - 18718522
Alignment:
| Q |
110 |
atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatg |
175 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
18718587 |
atgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatattcatatcgacagatg |
18718522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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