View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_4 (Length: 588)
Name: NF3030_low_4
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 21 - 573
Target Start/End: Original strand, 45024015 - 45024566
Alignment:
| Q |
21 |
agccacctttgtaaaacggtcgataaaatacacatgaaaaataggaagaat-----cggcgttgtatttaattaattaatgctaactaacttgatatata |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024015 |
agccacctttgtaaaacggtcgataaaaaacacatgaaaaataggaagaatcgaatcggcgttgtatttaattaattaatgctaactaacttgatatata |
45024114 |
T |
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| Q |
116 |
tgttaaccgataaaaactgacacacaaaagagttaattatgttaaagacaacaaaactcttgaaaaatgagaaaagctgcatgagtgacaagaagatatc |
215 |
Q |
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| T |
45024115 |
tgttaaccgataaaaactgacacacaaaagagttaattatgttaaagacaagaaaactcttgaaaaatgagaaaagctgcatgagtgacaagaagatatc |
45024214 |
T |
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| Q |
216 |
atgcatttgtacaacacatacatacaattgacnnnnnnntttgcggaggttcggttgtgacgaatgcagtattcattgtggtcactgctttctttgtacn |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45024215 |
atgcatttgtacaacacatacatacaattgacaaaaaaatttgcggaggttcggttgtgacgaatgcattattcattgtggtcactgctttctttgtac- |
45024313 |
T |
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| Q |
316 |
nnnnnnnnnnnnnnnnnnnnnatgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtaggaacttgagtgattacag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024314 |
-----tcttcttcttctttctatgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtaggaacttgagtgattacag |
45024408 |
T |
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| Q |
416 |
aaaatatcaaagatgagaagtgagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgtcctctgttggaatcttac |
515 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024409 |
aaaatatcaatgatgagaagtgagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgtcctctgttggaatcttac |
45024508 |
T |
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| Q |
516 |
aatacattctacaaacaatttctattatgtttgttggacatcttggtactctcccact |
573 |
Q |
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| T |
45024509 |
aatacattctacaaacaatttctattatgtttgttggacatcttggtactctcccact |
45024566 |
T |
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