View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_low_47 (Length: 250)

Name: NF3030_low_47
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_low_47
NF3030_low_47
[»] chr5 (14 HSPs)
chr5 (140-240)||(3261044-3261144)
chr5 (1-120)||(3260120-3260239)
chr5 (61-119)||(25627093-25627151)
chr5 (63-120)||(18437120-18437177)
chr5 (41-116)||(11352022-11352097)
chr5 (41-120)||(17028226-17028305)
chr5 (61-120)||(26078033-26078092)
chr5 (61-119)||(19043494-19043552)
chr5 (76-113)||(36958119-36958156)
chr5 (76-116)||(11375192-11375232)
chr5 (61-113)||(14285203-14285255)
chr5 (41-105)||(25979220-25979284)
chr5 (61-113)||(37258348-37258400)
chr5 (41-113)||(43442238-43442310)
[»] chr8 (18 HSPs)
chr8 (41-120)||(27750765-27750844)
chr8 (41-120)||(11819811-11819890)
chr8 (41-110)||(43594280-43594349)
chr8 (41-112)||(33727835-33727906)
chr8 (41-120)||(44780076-44780155)
chr8 (41-99)||(44595817-44595875)
chr8 (64-116)||(19703472-19703524)
chr8 (41-113)||(27871710-27871782)
chr8 (41-113)||(30483846-30483918)
chr8 (41-116)||(8059671-8059746)
chr8 (41-112)||(14701379-14701450)
chr8 (76-113)||(3624622-3624659)
chr8 (41-94)||(11492035-11492088)
chr8 (76-113)||(34628684-34628721)
chr8 (44-88)||(16025652-16025696)
chr8 (41-113)||(27979199-27979271)
chr8 (41-113)||(28036468-28036540)
chr8 (63-115)||(31408106-31408158)
[»] chr1 (13 HSPs)
chr1 (47-120)||(42787243-42787316)
chr1 (41-120)||(6122829-6122908)
chr1 (41-114)||(44961806-44961879)
chr1 (61-113)||(15786302-15786354)
chr1 (61-113)||(40810509-40810561)
chr1 (41-120)||(10150831-10150910)
chr1 (41-113)||(1600254-1600326)
chr1 (41-116)||(7219880-7219955)
chr1 (61-112)||(11063599-11063650)
chr1 (41-94)||(42858599-42858652)
chr1 (61-113)||(2799904-2799956)
chr1 (61-113)||(9165177-9165229)
chr1 (76-116)||(51814533-51814573)
[»] chr2 (13 HSPs)
chr2 (41-119)||(21195638-21195716)
chr2 (41-93)||(15825678-15825730)
chr2 (66-113)||(6859299-6859346)
chr2 (41-117)||(35203345-35203421)
chr2 (41-116)||(8162027-8162102)
chr2 (41-116)||(25931045-25931120)
chr2 (41-116)||(33582012-33582087)
chr2 (42-116)||(19244148-19244222)
chr2 (78-120)||(32687516-32687558)
chr2 (80-116)||(11738045-11738081)
chr2 (41-113)||(23230567-23230639)
chr2 (41-89)||(27244374-27244422)
chr2 (41-113)||(42327357-42327429)
[»] chr6 (10 HSPs)
chr6 (41-113)||(20213083-20213155)
chr6 (41-113)||(22107106-22107178)
chr6 (41-120)||(14199909-14199988)
chr6 (44-113)||(10338139-10338208)
chr6 (63-116)||(16535223-16535276)
chr6 (61-113)||(98745-98797)
chr6 (41-113)||(1992209-1992281)
chr6 (41-113)||(12633051-12633123)
chr6 (41-93)||(32613102-32613154)
chr6 (66-106)||(33964394-33964434)
[»] chr4 (17 HSPs)
chr4 (61-113)||(7292780-7292832)
chr4 (41-120)||(8030166-8030245)
chr4 (42-116)||(42644873-42644947)
chr4 (41-113)||(7949416-7949488)
chr4 (41-93)||(12448770-12448821)
chr4 (41-113)||(23377998-23378070)
chr4 (41-113)||(31826651-31826723)
chr4 (41-120)||(49576856-49576935)
chr4 (78-120)||(20216146-20216188)
chr4 (62-119)||(21375813-21375870)
chr4 (41-94)||(43124681-43124734)
chr4 (76-116)||(1730486-1730526)
chr4 (41-105)||(9693460-9693524)
chr4 (41-113)||(32992654-32992726)
chr4 (61-113)||(37109333-37109385)
chr4 (80-120)||(42380790-42380830)
chr4 (41-113)||(53496919-53496991)
[»] scaffold0178 (1 HSPs)
scaffold0178 (62-120)||(6619-6675)
[»] scaffold0126 (1 HSPs)
scaffold0126 (41-120)||(25309-25388)
[»] chr3 (18 HSPs)
chr3 (41-120)||(8075089-8075168)
chr3 (63-116)||(11642193-11642246)
chr3 (44-113)||(33899656-33899725)
chr3 (41-94)||(52769945-52769998)
chr3 (61-113)||(28703386-28703438)
chr3 (41-105)||(29186499-29186563)
chr3 (61-113)||(30311348-30311400)
chr3 (61-113)||(37788447-37788499)
chr3 (41-121)||(39400480-39400559)
chr3 (41-120)||(45308864-45308943)
chr3 (63-113)||(4222183-4222233)
chr3 (62-116)||(19154670-19154724)
chr3 (41-110)||(26988194-26988263)
chr3 (76-113)||(37051291-37051328)
chr3 (76-113)||(39253739-39253776)
chr3 (41-94)||(51903840-51903893)
chr3 (61-113)||(3427535-3427587)
chr3 (41-113)||(10445101-10445173)
[»] chr7 (15 HSPs)
chr7 (41-113)||(9183153-9183225)
chr7 (41-97)||(46572172-46572228)
chr7 (61-112)||(5672551-5672602)
chr7 (61-112)||(5697603-5697654)
chr7 (47-120)||(11700200-11700272)
chr7 (41-94)||(41975948-41976001)
chr7 (41-105)||(7721419-7721483)
chr7 (61-93)||(9608611-9608643)
chr7 (61-93)||(9836183-9836215)
chr7 (41-113)||(15137595-15137667)
chr7 (41-113)||(25590653-25590725)
chr7 (61-113)||(26459392-26459444)
chr7 (43-112)||(29196948-29197019)
chr7 (41-93)||(33181172-33181224)
chr7 (64-120)||(43590942-43590998)
[»] scaffold0122 (1 HSPs)
scaffold0122 (41-113)||(6884-6953)
[»] scaffold0300 (1 HSPs)
scaffold0300 (41-89)||(4406-4454)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 3261044 - 3261144
Alignment:
Q  140 taagttatgttgcagggttgattattgaattcagttattaaagtcatatttttgtgattcattttccattttattcaatattgcaggatattttttctgt 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  3261044 taagttatgttgcagggttgattattgaattcaattattaaagtcataattttgtgattcattttccattttattcaatattacaggacattttttctgt 3261143  T
Q  240 g 240  Q
    |    
T  3261144 g 3261144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3260120 - 3260239
Alignment:
Q  1 tatttattttaccattttatgttattaatatcannnnnnnaagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaa 100  Q
    |||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  3260120 tatttattttaccattttatgttattaatatcatttttttaagaagttaaattagttcaatcaaattgatactaaagagaattgaacctgagactttgaa 3260219  T
Q  101 gaggaacacactctcaagtc 120  Q
    |||||||||| | |||||||    
T  3260220 gaggaacacattttcaagtc 3260239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 25627151 - 25627093
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagt 119  Q
    |||||||||||| | ||||||||||||||||||| |||| ||||| ||||||| |||||    
T  25627151 tcaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagt 25627093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 18437177 - 18437120
Alignment:
Q  63 aaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||| ||||| ||||||||||||| || ||||||| ||||| ||||||||||||||    
T  18437177 aaattggcactagagagaatcgaacccgaaactttgaggaggagcacactctcaagtc 18437120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 11352097 - 11352022
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||| |||||||  |||  ||||||||||||  |||||||||||| |||||| |||| ||| ||||||||||||    
T  11352097 aagaagataaattaactcatccaaattgacactggagagaatcgaacttgagacattgaggagaaacacactctca 11352022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 17028226 - 17028305
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||   |||||||||||| || ||||| |||||||||| |||| ||||| ||||||| ||||||    
T  17028226 aagaagctaaattagcccacctaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtc 17028305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 26078033 - 26078092
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||| ||||| ||||||||||||||||||| |||||||| | || |||| ||||||    
T  26078033 tcaaattggcactagagagaatcgaacctgagaccttgaagagaagcatactcccaagtc 26078092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 19043552 - 19043494
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagt 119  Q
    |||||||| ||||| |||| || ||||||||||||||||  |||||||||||| |||||    
T  19043552 tcaaattggcactagagaggattgaacctgagactttgagaaggaacacactcccaagt 19043494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 36958119 - 36958156
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||||||||||||| || |||||||||||||    
T  36958119 agagaatcgaacctgagacttcgatgaggaacacactc 36958156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 11375192 - 11375232
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  11375192 agagaatcgaacttgagacattgaggaggaacacactctca 11375232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 14285255 - 14285203
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| |||| ||||| |||||||    
T  14285255 tcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 14285203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 25979284 - 25979220
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagagga 105  Q
    ||||||||||||||   | ||||||||||||  | ||||||||||||||||||| |||| |||||    
T  25979284 aagaagctaaattaaccccatcaaattgacataagagagaatcgaacctgagaccttgaggagga 25979220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 37258348 - 37258400
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||| | |||||||||||||||| || |||| ||||| |||||||    
T  37258348 tcaaattgacaccagagagaatcgaacctgaaaccttgaggaggagcacactc 37258400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 43442310 - 43442238
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||| |||||||||  ||  ||||||||||  | ||||||||||||||||||| |||| ||||| |||||||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactc 43442238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 27750844 - 27750765
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||| ||  ||||||||||||| || |||||||||||||||| |||| ||||| ||||||| ||||||    
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtc 27750765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 11819890 - 11819811
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| ||||||| ||||||    
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtc 11819811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 43594280 - 43594349
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacaca 110  Q
    ||||| |||||||||  ||  ||||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  43594280 aagaaactaaattagcccatccaaattgacactagagagaatcgaacctgagaccttgaggaggaacaca 43594349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 33727835 - 33727906
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacact 112  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| ||||||    
T  33727835 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacact 33727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 44780076 - 44780155
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||  ||||||||||||| || ||||| |||||||||| |||| ||||| ||||||| ||||||    
T  44780076 aagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtc 44780155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 44595817 - 44595875
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttga 99  Q
    |||||||||||||||| ||   ||||||||||||||||||||||||||| |||| ||||    
T  44595817 aagaagctaaattagtccatctaaattgacactaaagagaatcgaacctaagacgttga 44595875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 19703472 - 19703524
Alignment:
Q  64 aattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||  |||||||||||||||||| |||| ||||| ||||||||||    
T  19703472 aattgacactagggagaatcgaacctgagaccttgaggaggagcacactctca 19703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 27871782 - 27871710
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| |||| ||| ||| ||||||||| | || |||||||||||| ||||||||||| |||||||| ||||    
T  27871782 aagaagttaaactagctcactcaaattgatattagagagaatcgaacttgagactttgaggaggaacaaactc 27871710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 30483846 - 30483918
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| ||||||||| || |||||||| ||| | ||||||| |||||||||||| ||| ||||| |||||||    
T  30483846 aagaagataaattagtccattcaaattggcacaagagagaattgaacctgagactctgaggaggagcacactc 30483918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 8059746 - 8059671
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||||||| ||| ||| |||||||||||  |  |||||| ||||||||||| |||| ||||| ||||||||||    
T  8059746 aagaagctaaactagctcactcaaattgacatcagggagaatggaacctgagaccttgaggaggatcacactctca 8059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 14701379 - 14701450
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacact 112  Q
    |||||| |||||||| |||  ||||||||||| ||||||||| ||| ||||||||||||  |||| ||||||    
T  14701379 aagaagttaaattagctcatccaaattgacaccaaagagaattgaatctgagactttgagaaggagcacact 14701450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 3624659 - 3624622
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  3624659 agagaatcgaacctgagaccttgaagaggagcacactc 3624622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 11492035 - 11492088
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    |||||||||||||||  ||  |||||||||||| ||||||||||||||| ||||    
T  11492035 aagaagctaaattagcccacccaaattgacactgaagagaatcgaacctaagac 11492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 34628721 - 34628684
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  34628721 agagaatcgaacctgagactttgaggagaaacacactc 34628684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 16025652 - 16025696
Alignment:
Q  44 aagctaaattagttcaatcaaattgacactaaagagaatcgaacc 88  Q
    ||||||||||||||||   |||||||||||| |||||||||||||    
T  16025652 aagctaaattagttcatctaaattgacactagagagaatcgaacc 16025696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 27979271 - 27979199
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| ||||||||  ||  ||||||||||||| ||| |||||||| | ||||||||| |||||||| ||||    
T  27979271 aagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggaggaacaaactc 27979199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 28036540 - 28036468
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| ||||||||  ||  ||||||||||||| ||| |||||||| | ||||||||| |||||||| ||||    
T  28036540 aagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggaggaacaaactc 28036468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 31408106 - 31408158
Alignment:
Q  63 aaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctc 115  Q
    ||||||||| || |||||||||||||||| || |||| ||||| |||||||||    
T  31408106 aaattgacattagagagaatcgaacctgaaaccttgaggaggagcacactctc 31408158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 42787316 - 42787243
Alignment:
Q  47 ctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    ||||||||  ||| |||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  42787316 ctaaattaactcattcaaattgacactagagagactcgaatctgagactttgaggaggaacgcactctcaagtc 42787243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 6122908 - 6122829
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| ||||||| ||||||    
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtc 6122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 44961879 - 44961806
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactct 114  Q
    |||||||||||||||  ||  ||||||||||||| |||||||||||||||||||  ||| ||||| ||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactct 44961806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 15786302 - 15786354
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||| |||||||    
T  15786302 tcaaattgacaccaaagagaatcgaacctgagaccttgaggaggagcacactc 15786354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 40810561 - 40810509
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||    
T  40810561 tcaaattggcaccagagagaatcgaacctgagaccttgaagaggaacacactc 40810509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 10150831 - 10150910
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||| || ||||| ||||||   ||||||| |||||||||||||||| |||||  |||||| ||||||    
T  10150831 aagaagctaaattagtccactcaaactgacacctgagagaattgaacctgagactttgaggaggagtacactcccaagtc 10150910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 1600254 - 1600326
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||| ||||| ||  ||||||||||| | |||||||||||||||| ||||| | ||||| |||||||    
T  1600254 aagaagctaagttagtccatccaaattgacaccagagagaatcgaacctgaaactttaaggaggagcacactc 1600326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 7219880 - 7219955
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||||||| ||   ||||||  |  ||||||||||||||||||||||| || ||||| ||||||||||    
T  7219880 aagaagctaaattagtccacctaaattggtatcaaagagaatcgaacctgagacttcgaggaggagcacactctca 7219955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 11063650 - 11063599
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacact 112  Q
    |||||||| ||||| |||||||||||||| |||| |||| ||||||||||||    
T  11063650 tcaaattggcactagagagaatcgaacctaagaccttgaggaggaacacact 11063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 42858599 - 42858652
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    ||||| |||||||||  || |||||||||||| | |||||||||||||||||||    
T  42858599 aagaaactaaattagcccattcaaattgacaccagagagaatcgaacctgagac 42858652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2799956 - 2799904
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| |||| ||||| |||||||    
T  2799956 tcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 2799904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 9165177 - 9165229
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||| |||||||||||||||| ||||| |||||||    
T  9165177 tcaaattggcaccagagagaattgaacctgagactttgaggaggagcacactc 9165229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 51814573 - 51814533
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  51814573 agagaatcgaacctgagaccttgaggaggagcacactctca 51814533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 21195638 - 21195716
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagt 119  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| ||||||| |||||    
T  21195638 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagt 21195716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 15825678 - 15825730
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgaga 93  Q
    ||||||||||||||| ||||||||||||||||  |||||||| ||||||||||    
T  15825678 aagaagctaaattagctcaatcaaattgacaccgaagagaattgaacctgaga 15825730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 6859299 - 6859346
Alignment:
Q  66 ttgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| || |||||||||||||||||||||||||||||| |||||||    
T  6859299 ttgacattagagagaatcgaacctgagactttgaagaggagcacactc 6859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 35203345 - 35203421
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaa 117  Q
    ||||||||||||||   || | |||||||||| ||||| |||||||| ||||||||||| || || |||||||||||    
T  35203345 aagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactctcaa 35203421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 8162027 - 8162102
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||||||||||||||| | |||||||||||  |||||||| ||| |||||| |  | |||||||||| |||||    
T  8162027 aagaagctaaattagttcacttaaattgacactggagagaatccaacttgagacctcaaggaggaacacattctca 8162102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 25931120 - 25931045
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||| ||||||||  |||  ||||||||||| ||||||||||||| ||||||||| || ||  ||||||||||||    
T  25931120 aagaaactaaattaactcatccaaattgacaccaaagagaatcgaatctgagacttcgaggataaacacactctca 25931045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 33582087 - 33582012
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||||||| ||   ||||||||| || ||||||||||||||||||| |  | ||||| ||||||||||    
T  33582087 aagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctca 33582012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 19244222 - 19244148
Alignment:
Q  42 agaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||| |||||||||  || |||||||| ||| | ||||||||||||||||||| |||  ||||| ||||||||||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctca 19244148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 32687558 - 32687516
Alignment:
Q  78 agaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  32687558 agaatcgaacctgagacctcgaggaggaacacactctcaagtc 32687516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 11738045 - 11738081
Alignment:
Q  80 aatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  11738045 aatcgaacctgaaactttgaggaggaacacactctca 11738081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 23230567 - 23230639
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| |||||||| |||  ||||||||||||  ||||||| |||||||  ||||||| ||||| |||||||    
T  23230567 aagaagttaaattagctcatccaaattgacactggagagaattgaacctggaactttgaggaggagcacactc 23230639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 27244422 - 27244374
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacct 89  Q
    ||||||||||||||| ||| | ||||| ||||| |||||||||||||||    
T  27244422 aagaagctaaattagctcacttaaattaacactgaagagaatcgaacct 27244374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 42327357 - 42327429
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||| ||||||||||  ||  ||||||| |||  |||||||||||||||||||| |||| ||||| |||||||    
T  42327357 aagatgctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactc 42327429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 20213155 - 20213083
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| |||||||    
T  20213155 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 20213083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 22107178 - 22107106
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||| |||| ||||| |||||||    
T  22107178 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 22107106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 14199909 - 14199988
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||| ||  ||||||||||||| |  |||||||| ||||||| |||| ||||| ||||||| ||||||    
T  14199909 aagaagctaaattagtccacccaaattgacactagaaggaatcgaatctgagaccttgaggaggagcacactcccaagtc 14199988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 10338139 - 10338208
Alignment:
Q  44 aagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||| |||||||| ||||||||   | |||||||||||||||| |||| ||||| |||||||    
T  10338139 aagctaaattagctcaatcaagttgacactggggggaatcgaacctgagaccttgaggaggagcacactc 10338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 16535276 - 16535223
Alignment:
Q  63 aaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||| ||||| |||||||||||||||| ||||| | ||||| ||||||||||    
T  16535276 aaattggcactacagagaatcgaacctgaaacttttaggaggagcacactctca 16535223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 98797 - 98745
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||| |||||| ||| |||| |||||| |||| |||||||||||||    
T  98797 tcaaattgacattaaagataattgaacttgagaccttgaggaggaacacactc 98745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 1992209 - 1992281
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  ||   |||||||||||| |||||||||||| | ||| || ||||| ||||||||||    
T  1992209 aagaagctaaattagcacacctaaattgacactagagagaatcgaacataagatttcgaagaagaacacactc 1992281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 12633123 - 12633051
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||| || | ||||||||| |  |||||||||||| |||||  | |||||||| |||||||    
T  12633123 aagaagctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactc 12633051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 32613102 - 32613154
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgaga 93  Q
    ||||||||||| |||| || | ||||||||||| ||||||||||||| |||||    
T  32613102 aagaagctaaactagtccatttaaattgacactgaagagaatcgaacatgaga 32613154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 33964434 - 33964394
Alignment:
Q  66 ttgacactaaagagaatcgaacctgagactttgaagaggaa 106  Q
    ||||||||||||| |||||||| ||||||||||| ||||||    
T  33964434 ttgacactaaagataatcgaacttgagactttgaggaggaa 33964394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 7292780 - 7292832
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||| |||||||    
T  7292780 tcaaattggcactagagagaatcgaacctgagactttgaggaggagcacactc 7292832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 8030166 - 8030245
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||  ||||||||||||| || ||||||||| |||||| |||| ||||| ||||||| ||||||    
T  8030166 aagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactcccaagtc 8030245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 42644873 - 42644947
Alignment:
Q  42 agaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||||||||||| ||| ||||||  || |  ||| |||||||||||||||||||| || |||||||||||||    
T  42644873 agaagctaaattagtccaaccaaattagcattggagataatcgaacctgagactttgaggaagaacacactctca 42644947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 7949416 - 7949488
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  ||   |||||||||| | ||||||||||||||||||| |||| ||||| |||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 12448821 - 12448770
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgaga 93  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||    
T  12448821 aagaagctaaattagctcact-aaattggcactaaagagaatcgaacctgaga 12448770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 23378070 - 23377998
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||| |||  |  |||||||| ||||| ||||||||||||||||||| |||| ||||| |||||||    
T  23378070 aagaagctaaactagccccctcaaattggcactagagagaatcgaacctgagaccttgaggaggagcacactc 23377998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 31826723 - 31826651
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| ||||||||  ||  |||||||||||||||| ||||||||| |||||| |||| ||||| |||||||    
T  31826723 aagaaggtaaattagcccacccaaattgacactaaagggaatcgaacttgagaccttgaggaggagcacactc 31826651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 49576856 - 49576935
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||| ||| ||||| ||  |||||||||| |  ||||||||||||||||||| |||| ||||| ||||||| ||||||    
T  49576856 aagaagttaagttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactcccaagtc 49576935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 20216188 - 20216146
Alignment:
Q  78 agaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  20216188 agaatcgaacatgagactttgaggagaaacacactctcaagtc 20216146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 21375870 - 21375813
Alignment:
Q  62 caaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagt 119  Q
    ||||||||||||| | ||||||||| ||||||  |||| ||||| |||||||||||||    
T  21375870 caaattgacactagaaagaatcgaatctgagagcttgaggaggagcacactctcaagt 21375813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 43124734 - 43124681
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    |||||||||||||||  || ||||||||||||| |||| |||||||||| ||||    
T  43124734 aagaagctaaattagcccactcaaattgacactgaagaaaatcgaacctaagac 43124681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 1730486 - 1730526
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||| ||| |||||||||||||||||| ||||||||||    
T  1730486 agagaatagaatctgagactttgaagaggagcacactctca 1730526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 9693460 - 9693524
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagagga 105  Q
    |||||| ||||||||  ||  ||||||||||||| || |||||||||||||||| |||| |||||    
T  9693460 aagaaggtaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggagga 9693524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 32992726 - 32992654
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||| |||| || ||||||||||||    ||||||||||| |||||| |||| ||||| |||||||    
T  32992726 aagaagctaaactagtccactcaaattgacaccggggagaatcgaacttgagaccttgaggaggagcacactc 32992654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 37109333 - 37109385
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| |||| ||||| |||||||    
T  37109333 tcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 37109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 42380790 - 42380830
Alignment:
Q  80 aatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    ||||||||| |||||||||||||||| |||| |||||||||    
T  42380790 aatcgaaccggagactttgaagaggagcacattctcaagtc 42380830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 53496991 - 53496919
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||| ||||||||| ||| ||||||| | | | |||||||| || |||||||||||| ||||| |||||||    
T  53496991 aagaagttaaattagtccaaccaaattggctccagagagaatcaaatctgagactttgaggaggagcacactc 53496919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 6619 - 6675
Alignment:
Q  62 caaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||  |||||||||||| |||||||||| ||||||||||||| ||||||    
T  6619 caaattgacacta--gagaatcgaacccgagactttgaggaggaacacactcccaagtc 6675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 25309 - 25388
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    ||||||||||| ||| ||| |||||||||||| | ||| ||||||||||||||| ||||  |||| ||||||| ||||||    
T  25309 aagaagctaaaatagctcattcaaattgacaccagagataatcgaacctgagaccttgagaaggagcacactcccaagtc 25388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 8075089 - 8075168
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||  ||  ||||||||||||| || ||||||||||||| || |||| ||||| ||||||| ||||||    
T  8075089 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagcacactcccaagtc 8075168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 11642193 - 11642246
Alignment:
Q  63 aaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    |||||||||||||||| ||||||||||||||| |||| ||||| |||| |||||    
T  11642193 aaattgacactaaagataatcgaacctgagaccttgaggaggatcacaatctca 11642246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 33899725 - 33899656
Alignment:
Q  44 aagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||||  ||  ||||||||||| ||||||||||||||||||||| | || ||||| |||||||    
T  33899725 aagctaaattagcacacccaaattgacaccaaagagaatcgaacctgagacctagaggaggagcacactc 33899656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 52769945 - 52769998
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    |||||||||||||||  ||   ||||||||||||||||||||||||||||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagac 52769998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 28703386 - 28703438
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| |||||||||| |||||||    
T  28703386 tcaaattggcaccagagagaatcgaacctgagaccttgaagaggagcacactc 28703438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 29186563 - 29186499
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagagga 105  Q
    |||||| ||||||||| ||  |||||||||||||||||||||||||| || ||| |||| |||||    
T  29186563 aagaagttaaattagtccatccaaattgacactaaagagaatcgaacatgtgaccttgaggagga 29186499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 30311400 - 30311348
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| ||||||||||||||||||||| |||| ||||| |||||||    
T  30311400 tcaaattggcaccaaagagaatcgaacctgagaccttgaggaggagcacactc 30311348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 37788447 - 37788499
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||||| ||||||||||||||||||| |||| ||||| |||||||    
T  37788447 tcaaattggcactagagagaatcgaacctgagaccttgaggaggagcacactc 37788499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 39400559 - 39400480
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtca 121  Q
    ||||| |||||||||| || ||||||| |||| ||||| ||| |||| ||| | ||||||||||| |||||||||||||||    
T  39400559 aagaaactaaattagtcca-tcaaattcacaccaaagaaaattgaacatgaaattttgaagaggagcacactctcaagtca 39400480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 45308864 - 45308943
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||||||||| || |  |||||||||| |||| ||||||||||||||| | || ||||| || |||| ||||||    
T  45308864 aagaagctaaattagtccacttgaattgacactgaagataatcgaacctgagacctcgaggaggagcatactcacaagtc 45308943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 4222233 - 4222183
Alignment:
Q  63 aaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||| | |||||||||||||| ||||||||| ||||| |||||||    
T  4222233 aaattgacaccagagagaatcgaacctaagactttgaggaggagcacactc 4222183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 19154724 - 19154670
Alignment:
Q  62 caaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctca 116  Q
    ||||||||||  ||||||||||||||||||||| || | ||||| ||||||||||    
T  19154724 caaattgacatcaaagagaatcgaacctgagacctttaggaggagcacactctca 19154670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 26988263 - 26988194
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacaca 110  Q
    |||||| |||||||| |||  |||||||| ||| ||||||||||||||| ||| ||| | ||||||||||    
T  26988263 aagaagttaaattagctcatccaaattgatactgaagagaatcgaacctcagattttaaggaggaacaca 26988194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 37051291 - 37051328
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||||||||| | |||||||||||||    
T  37051291 agagaatcgaacctgagactttaaggaggaacacactc 37051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 39253776 - 39253739
Alignment:
Q  76 agagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  39253776 agagaatcgaacctgagaccttgaagaggagcacactc 39253739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 51903840 - 51903893
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    |||||||||||||||  || ||||||||||||   |||||||||||||||||||    
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagac 51903893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 3427535 - 3427587
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||||| ||||||||||| ||||||| |||| ||||| |||||||    
T  3427535 tcaaattggcactagagagaatcgaatctgagaccttgaggaggagcacactc 3427587  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 10445101 - 10445173
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  || |||||||  ||| | ||||||||||||||||||| | || ||||| |||||||    
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactc 10445173  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 9183153 - 9183225
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||| |||||||||  ||  ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||    
T  9183153 aagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactc 9183225  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 46572172 - 46572228
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagacttt 97  Q
    |||||||||||||||| ||| ||||||||||| | |||||||||||| ||| |||||    
T  46572172 aagaagctaaattagtccaaccaaattgacaccagagagaatcgaacatgatacttt 46572228  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 5672551 - 5672602
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacact 112  Q
    ||||||||| ||||||||||||||||| |||||| |||| || |||||||||    
T  5672551 tcaaattgagactaaagagaatcgaacttgagaccttgaggaagaacacact 5672602  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 5697603 - 5697654
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacact 112  Q
    ||||||||| ||||||||||||||||| |||||| |||| || |||||||||    
T  5697603 tcaaattgagactaaagagaatcgaacttgagaccttgaggaagaacacact 5697654  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 11700272 - 11700200
Alignment:
Q  47 ctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    |||||||||  || |||||||| ||| | ||||||||||||||||||| |||| ||||| || |||||||||||    
T  11700272 ctaaattagcccactcaaattggcac-agagagaatcgaacctgagaccttgaggaggagcaaactctcaagtc 11700200  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 41976001 - 41975948
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagac 94  Q
    |||||||||||||||  || | |||||||||||| |||||||||||| ||||||    
T  41976001 aagaagctaaattagcccacttaaattgacactagagagaatcgaacttgagac 41975948  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 7721483 - 7721419
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagagga 105  Q
    |||||||||||||| | ||  ||||||||||| | |||||||||||| |||||| |||| |||||    
T  7721483 aagaagctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggagga 7721419  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 9608611 - 9608643
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgaga 93  Q
    |||||||||||||| ||||||||||||||||||    
T  9608611 tcaaattgacactagagagaatcgaacctgaga 9608643  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 9836183 - 9836215
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgaga 93  Q
    |||||||||||||| ||||||||||||||||||    
T  9836183 tcaaattgacactagagagaatcgaacctgaga 9836215  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 15137667 - 15137595
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    ||||| |||||||||  ||  ||||||||||| | |||||||| |||||||||| |||| ||||| |||||||    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactc 15137595  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 25590725 - 25590653
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  || ||||||||||||  |||| ||||||||| ||||| | || ||||| |||||||    
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactc 25590653  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 26459392 - 26459444
Alignment:
Q  61 tcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||| ||| | ||||||||||||||||||| |||| ||||| |||||||    
T  26459392 tcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 26459444  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 29197019 - 29196948
Alignment:
Q  43 gaagctaaattagttcaatcaaattgacactaaagagaa--tcgaacctgagactttgaagaggaacacact 112  Q
    ||||||||||||| |||  || |||||||||| ||||||  ||||||||||||| ||||||| || ||||||    
T  29197019 gaagctaaattagatcacccatattgacactagagagaaaatcgaacctgagaccttgaagacgagcacact 29196948  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 33181172 - 33181224
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgaga 93  Q
    |||||||||||||||  ||  ||||||||||||| || |||||||||||||||    
T  33181172 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaga 33181224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 43590998 - 43590942
Alignment:
Q  64 aattgacactaaagagaatcgaacctgagactttgaagaggaacacactctcaagtc 120  Q
    ||||| |||||  |||||||||||||||||| |||| ||||| ||||||| ||||||    
T  43590998 aattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaagtc 43590942  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 6884 - 6953
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacctgagactttgaagaggaacacactc 113  Q
    |||||||||||||||  || |||||||||||| | |||   |||||||||||||||||| ||||| |||||||    
T  6884 aagaagctaaattagcccactcaaattgacaccagaga---tcgaacctgagactttgaggaggagcacactc 6953  T

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Target: scaffold0300 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 4454 - 4406
Alignment:
Q  41 aagaagctaaattagttcaatcaaattgacactaaagagaatcgaacct 89  Q
    |||||||||||||||| ||  ||||||||||||| || |||||||||||    
T  4454 aagaagctaaattagtccacccaaattgacactagagggaatcgaacct 4406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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