View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_49 (Length: 250)
Name: NF3030_low_49
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_49 |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: scaffold1333 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 1160 - 1103
Alignment:
| Q |
178 |
tcatcttccataatctcacaaaataaatatagttcctctttgagttccaagttcattt |
235 |
Q |
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| T |
1160 |
tcatcttccataatctcacaaaataaatatagttcctctttgagttccaagttcattt |
1103 |
T |
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Target: scaffold1333; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 1277 - 1226
Alignment:
| Q |
12 |
atgaatacaggctgaagttcaataaac-aattaaaatgcaaaaaagtgatgg |
62 |
Q |
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| T |
1277 |
atgaatacaggctgaagttcaataagcgaattaaaatgcaaaatagtgatgg |
1226 |
T |
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