View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_low_5 (Length: 582)
Name: NF3030_low_5
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_5 |
 | |
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| [»] scaffold0729 (3 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 6594122 - 6593546
Alignment:
| Q |
1 |
ctgaatgtaattcaagactgcaaagtggctatagtcttgttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6594122 |
ctgaatgtaattcaagactgcaaagtcgctgtagtcttgttttcaaaaaattatactaattcaagttcgtgtatacaagaattggagaaaataactcagt |
6594023 |
T |
|
| Q |
101 |
gttgccaaacctcagatttcgttgttctgcctgtgttctatcatcacggtgtctctcccttcttctatcatggagatatgtttggaggaaacgcttttcg |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
6594022 |
gttgccgaacctcagatttggttgttctgcctgtgttctatcaa---ggtgtcggtcccttct---atcatggagatatgtttggaggagacacttttca |
6593929 |
T |
|
| Q |
201 |
tgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcagcgatcactaaagctaacagatatttagga |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6593928 |
tgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacctgggtagcagcgatcactaaagctaacaaatatttagga |
6593829 |
T |
|
| Q |
301 |
tcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgagattttaatttacacctttcttttggccta |
400 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6593828 |
tcacgtgatctcatacccaaacccatatacaggtaattttaagttcttttttaaaataactgagacttgagattttaatttacacctatcttttggccta |
6593729 |
T |
|
| Q |
401 |
tgcacatgttggagaattattata------------------acatatattatgcaggtacgaacatgtaccaattatggattatattaaggatatggtt |
482 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||| |
|
|
| T |
6593728 |
tgcacatgtaggagaattattatacatataatcgtcttttgttcatatattatacaggtacgaacatgtatcaattacggactatattaaggatatagtt |
6593629 |
T |
|
| Q |
483 |
gaacatgttacatgtgtgataaacaagaatagagatttttgtgcgaatttctgtacacccagtgtaaaatctggtgtgcaaga |
565 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6593628 |
gaacatattacatgtgtgataaacaagaatagagatttttgtgcgaattcctgtacacccagtgtaaaatctggtgtgcaaga |
6593546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 172 - 387
Target Start/End: Original strand, 6791638 - 6791852
Alignment:
| Q |
172 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
271 |
Q |
| |
|
|||| ||||||||||||| || |||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6791638 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6791737 |
T |
|
| Q |
272 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
371 |
Q |
| |
|
||||||||||||| |||| |||||||| ||| |||||||||||| ||||| |||| |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
6791738 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttc-tttttaaaatagttgagacttgag |
6791836 |
T |
|
| Q |
372 |
attttaatttacacct |
387 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
6791837 |
attttaatatacacct |
6791852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 567
Target Start/End: Original strand, 6791933 - 6792074
Alignment:
| Q |
426 |
catatattatgcaggtacgaacatgtaccaattatggattatattaaggatatggttgaacatgttacatgtgtgataaacaagaatagagatttttgtg |
525 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| || ||| ||||||||||| |||||||||||| | ||||| |||||||||||||||| ||||| || |
|
|
| T |
6791933 |
catatattatacaggtacgaacatataaatattaagggttacattaaggatatagttgaacatgtttcttgtgttataaacaagaatagagttttttctg |
6792032 |
T |
|
| Q |
526 |
cgaatttctgtacacccagtgtaaaatctggtgtgcaagatg |
567 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6792033 |
tgacttcctgtacacccagtgtaaaatctggtgtgcaagatg |
6792074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6791464 - 6791564
Alignment:
| Q |
1 |
ctgaatgtaattcaagactgcaaagtggctatagtcttgttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||| | ||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6791464 |
ctgaatgtaattcaagactgcaaaattgttatagtagtattttcaaaaaattatgctaactcgagttcgtgtatacaagaattggagaaaataactaagt |
6791563 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
6791564 |
g |
6791564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 6503221 - 6503152
Alignment:
| Q |
40 |
ttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagtgttgccaaa |
109 |
Q |
| |
|
|||||||| || |||||||| ||||| | |||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6503221 |
ttttcaaagaattatactaaatcaagatggtgtcttcaagaattggagaaaataacccagtgttgccaaa |
6503152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 6737586 - 6737688
Alignment:
| Q |
1 |
ctgaatgtaattcaagactgcaaagtggctatagtcttgttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagt |
100 |
Q |
| |
|
|||||||| ||| |||| |||||||| | | ||||| | || ||||| || ||||||||||| || | |||| | ||||||||||||||||||||| ||| |
|
|
| T |
6737586 |
ctgaatgtgattgaagattgcaaagttgttgtagtcgtattatcaaagaattatactaattctagatggtgtcttcaagaattggagaaaataactgagt |
6737685 |
T |
|
| Q |
101 |
gtt |
103 |
Q |
| |
|
||| |
|
|
| T |
6737686 |
gtt |
6737688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 6506728 - 6506659
Alignment:
| Q |
40 |
ttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagtgttgccaaa |
109 |
Q |
| |
|
|||||||| || ||| ||||||||| | |||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6506728 |
ttttcaaagaattattttaattcaagatggtgtcttcaagaattggagaaaataacccagtgttgccaaa |
6506659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 6830073 - 6830145
Alignment:
| Q |
67 |
tcgtgtatacaagaattggagaaaataactcagtgttgccaaacctcagatttcgttgttctgcctgtgttct |
139 |
Q |
| |
|
|||||| | ||||||||||||||||||||| | ||||| | ||||||||| || |||||| | |||||||||| |
|
|
| T |
6830073 |
tcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttct |
6830145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 172 - 387
Target Start/End: Complemental strand, 6991 - 6777
Alignment:
| Q |
172 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
271 |
Q |
| |
|
|||| ||||||||||||| || |||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6991 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6892 |
T |
|
| Q |
272 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
371 |
Q |
| |
|
||||||||||||| |||| |||||||| ||| |||||||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6891 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttct-ttttaaaatagttgagacttgag |
6793 |
T |
|
| Q |
372 |
attttaatttacacct |
387 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
6792 |
attttaatatacacct |
6777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 426 - 567
Target Start/End: Complemental strand, 6696 - 6555
Alignment:
| Q |
426 |
catatattatgcaggtacgaacatgtaccaattatggattatattaaggatatggttgaacatgttacatgtgtgataaacaagaatagagatttttgtg |
525 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| || ||| ||||||||||| |||||||||||| | ||||| |||||||||||||||| || || || |
|
|
| T |
6696 |
catatattatacaggtacgaacatataaatattaagggttacattaaggatatagttgaacatgtttcttgtgttataaacaagaatagagtttcttctg |
6597 |
T |
|
| Q |
526 |
cgaatttctgtacacccagtgtaaaatctggtgtgcaagatg |
567 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6596 |
tgacttcctgtacacccagtgtaaaatctggtgtgcaagatg |
6555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7165 - 7065
Alignment:
| Q |
1 |
ctgaatgtaattcaagactgcaaagtggctatagtcttgttttcaaaaaactatactaattcaagttcgtgtatacaagaattggagaaaataactcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||| | ||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7165 |
ctgaatgtaattcaagactgcaaaattgttatagtagtattttcaaaaaattatgctaactcgagttcgtgtatacaagaattggagaaaataactaagt |
7066 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
7065 |
g |
7065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 9574 - 9646
Alignment:
| Q |
67 |
tcgtgtatacaagaattggagaaaataactcagtgttgccaaacctcagatttcgttgttctgcctgtgttct |
139 |
Q |
| |
|
|||||| | ||||||||||||||||||||| | ||||| | ||||||||| || |||||| | |||||||||| |
|
|
| T |
9574 |
tcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttct |
9646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16409930 - 16409965
Alignment:
| Q |
1 |
ctgaatgtaattcaagactgcaaagtggctatagtc |
36 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16409930 |
ctgaatgtaattcaagactgcaaagtcgctatagtc |
16409965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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