View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_50 (Length: 249)
Name: NF3030_low_50
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 3255647 - 3255870
Alignment:
| Q |
8 |
gagtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacactt |
107 |
Q |
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| T |
3255647 |
gagtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgtggtctttaaaacgacactt |
3255746 |
T |
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| Q |
108 |
gaggcaaaactttttgaagggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtg |
207 |
Q |
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| T |
3255747 |
gaggcgaaacattttgaggggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtg |
3255846 |
T |
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| Q |
208 |
gtttcatcttcaaagcaaagaaca |
231 |
Q |
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| T |
3255847 |
gtttcatcttcaaagcaaagaaca |
3255870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 14020483 - 14020277
Alignment:
| Q |
16 |
tgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacacttgaggcaaa |
115 |
Q |
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| T |
14020483 |
tgaagttcctcgatacaacgctcttttgtggcttctagccattttgtcacattaaatggacgattttgcttgtggtatctataacgaaagttgaggcgaa |
14020384 |
T |
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| Q |
116 |
actttttgaagg----gttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtggttt |
211 |
Q |
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| T |
14020383 |
acattttgagggtttagttggttggttgcatgaggagagagcatgatagtattgacaatgcaacagaagcatggtaagacatcataatcgttgatgattt |
14020284 |
T |
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| Q |
212 |
catcttc |
218 |
Q |
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| T |
14020283 |
catcttc |
14020277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 14271579 - 14271406
Alignment:
| Q |
9 |
agtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggac-ccttttgattgcggtctttaaaatgacactt |
107 |
Q |
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|||||| |||| ||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||| || | |||| || | || |
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| T |
14271579 |
agtgaggtgaagttcctcaatacaacgctcttttgtggcttctagccattttgacacattaaatggactatttttgcttgtggcatccaaaacgaaagtt |
14271480 |
T |
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| Q |
108 |
gaggcaaaactttttgaagggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagc |
181 |
Q |
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| T |
14271479 |
gaggcgaaacattttgaggggtttgttggttgcacgaagagagagcatgataatattgacaatgtggcagaagc |
14271406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 14017982 - 14017848
Alignment:
| Q |
11 |
tgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacacttgag |
110 |
Q |
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||||||||| ||||||||||| | | |||||| |||||||||||||| | ||| |||||||| || ||||| ||||| || |||| |||| ||||| |
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| T |
14017982 |
tgagatgaaattcctcaatacaatgtcgttttgtggcttctagccattttttcaaattaaatgaactattttgcttgcgttccataaagcgacagttgag |
14017883 |
T |
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| Q |
111 |
gcaaaactttttgaagggttgatttgttgcacgag |
145 |
Q |
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| T |
14017882 |
gctaaagattttgaggggttgattggttacacgag |
14017848 |
T |
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