View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_54 (Length: 243)
Name: NF3030_low_54
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 48955562 - 48955779
Alignment:
| Q |
9 |
cacataaacgccaaattaagtaacactgttactttatacaacctgttgtagtagggagtggcggcgatcttgcattttccatcaaatatattnnnnnnnn |
108 |
Q |
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| T |
48955562 |
cacataaacgccaaattaagtaacactgttactttatacaacctgttgtagtagggagtagcggtgatcttgcattttccatcaaatatattgagagaga |
48955661 |
T |
|
| Q |
109 |
nnnnnnnnagggttgaggttggaggtgatgaataggaacagaaccagaatgaaagcaatttcatgtggtaatggaatttgacagaaagatgagtgagcac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48955662 |
gagaga--agggttgaggttggaggtgatgaataggaacagaaccagaatgaaagcaatttcatgtggtaatggaatttgacagaaagatgagtgagcac |
48955759 |
T |
|
| Q |
209 |
gcagaggcaacgatatacat |
228 |
Q |
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||| |||||||||||||||| |
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| T |
48955760 |
gcaaaggcaacgatatacat |
48955779 |
T |
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