View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_55 (Length: 242)
Name: NF3030_low_55
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_55 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 18930931 - 18931172
Alignment:
| Q |
1 |
ctcaggaagattgatacttatctttttggcaaagtgccacatgataaacttataactccgagttactattttagaagaatttcttaggggtaagatacat |
100 |
Q |
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| T |
18930931 |
ctcaggaagattgatactaatctttttggcaaagtgccacatgataaacttataactccgagttactattttggaagaatttcttagaggtaagatacat |
18931030 |
T |
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| Q |
101 |
tcagagatgattttgtatagaaccttgtattccggattcaagtccgaataactctttccgtttggcttctcgaaaattattccttgaagttcgtctttta |
200 |
Q |
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| T |
18931031 |
ccagagataattttgtatagaaccttgtattccggattcaagtccgaataactctttccgtttggcttctcgaaaattattccttgaagttcgtctttta |
18931130 |
T |
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| Q |
201 |
tttcttcctcattccattcatcagaaaacttcacaccttcag |
242 |
Q |
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| T |
18931131 |
tttcttcctcattccattcatcagaaaacttcacaccttcag |
18931172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36845239 - 36845480
Alignment:
| Q |
1 |
ctcaggaagattgatacttatctttttggcaaagtgccacatgataaacttataactccgagttactattttagaagaatttcttaggggtaagatacat |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
36845239 |
ctcaggaagattgatacttatctttttggcatagtgccacatgataaacttgtagctccgagttactattttggaagaatttcttaaaggtaagatacat |
36845338 |
T |
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| Q |
101 |
tcagagatgattttgtatagaaccttgtattccggattcaagtccgaataactctttccgtttggcttctcgaaaattattccttgaagttcgtctttta |
200 |
Q |
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| T |
36845339 |
ccggagataattttatatagaaccttgtattccggattcaagtccgaataactctttccgtttggcttctcgaaaattattccttgaagttcctctttga |
36845438 |
T |
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| Q |
201 |
tttcttcctcattccattcatcagaaaacttcacaccttcag |
242 |
Q |
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| T |
36845439 |
tttcttcctcattccattcatcagaaaactttacaccttcag |
36845480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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