View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_57 (Length: 239)
Name: NF3030_low_57
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 7006343 - 7006149
Alignment:
| Q |
28 |
ttttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcatttcctttttacaaaggcaaattagatat |
127 |
Q |
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| T |
7006343 |
ttttccgggcaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcatttcctttttacaaaggcaaattagatat |
7006244 |
T |
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| Q |
128 |
ccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaattacatgaaaattgcacaat |
222 |
Q |
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| T |
7006243 |
ccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgcaaaattaattacatgaaaattgcacaat |
7006149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 7008195 - 7008001
Alignment:
| Q |
28 |
ttttccagccaagatgtgaagaagacgaaatcacgaa-----aaaactgaaacatgaaaccttga-cacgattttcatttcctttttacaaaggcaaatt |
121 |
Q |
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|||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||| | |||||||||| | ||||||||||||| ||||||| |
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| T |
7008195 |
ttttccagccaaaatatgaagaagacgaaatcacgaagaaaaaaaacttaaacatgaaacctttaacacgattttcttgtcctttttacaaacgcaaatt |
7008096 |
T |
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| Q |
122 |
agatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaattacatgaaaattg |
216 |
Q |
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| T |
7008095 |
agatatccacctaaggaacatgggaaaacattgctcaggagtgtactaaggagctatatgtccagaaccctgcaaaattaattacatgaaaattg |
7008001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 7058698 - 7058588
Alignment:
| Q |
106 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaatta |
205 |
Q |
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| T |
7058698 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattaatta |
7058599 |
T |
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| Q |
206 |
catgaaaattg |
216 |
Q |
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||||||||||| |
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| T |
7058598 |
catgaaaattg |
7058588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 7042630 - 7042522
Alignment:
| Q |
106 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaatta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
7042630 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgtatgtcccgaaccctgcaaaattaatta |
7042531 |
T |
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| Q |
206 |
catgaaaat |
214 |
Q |
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|| |||||| |
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| T |
7042530 |
cacgaaaat |
7042522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 7049783 - 7049672
Alignment:
| Q |
106 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaa-ttaatt |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
7049783 |
tttacaaaggcaaattagatatccacctagagaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaatttaatt |
7049684 |
T |
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| Q |
205 |
acatgaaaattg |
216 |
Q |
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|||||||||||| |
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| T |
7049683 |
acatgaaaattg |
7049672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 6997492 - 6997402
Alignment:
| Q |
106 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaa |
196 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6997492 |
tttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgcaa |
6997402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 7016014 - 7015916
Alignment:
| Q |
107 |
ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaatta |
205 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7016014 |
ttacaaaggtaaattagatatccacctagtgaacatgccaaaacattgatcaggagtgtactcaggagctgtatgtcctgaaccctgcaaaattaatta |
7015916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 7022917 - 7022817
Alignment:
| Q |
106 |
tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaaaattaatta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | | ||||||||||||||||||||||||||||||||||| |
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| T |
7022917 |
tttacaaaggcaaattagatatccacctagtgaacatggcaaaacattgttcaggagcatccgcaggagctgtatgtcctgaaccctgcaaaattaatta |
7022818 |
T |
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| Q |
206 |
c |
206 |
Q |
| |
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| T |
7022817 |
c |
7022817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 7029671 - 7029572
Alignment:
| Q |
107 |
ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact-ctggagctgtatgtcctgaaccctgcaaaattaatta |
205 |
Q |
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||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
7029671 |
ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaaaattaatta |
7029573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7042805 - 7042695
Alignment:
| Q |
1 |
ttgtagcacagtaagcagaatatt-atattttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcat |
99 |
Q |
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| T |
7042805 |
ttgtaacatagtaagcagaatattcattttttccagccaagatgtgatgaacatgaa-tcagaaaacaactgaaacatgcaaccttgacattattttctt |
7042707 |
T |
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| Q |
100 |
ttcctttttaca |
111 |
Q |
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||||||||||| |
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| T |
7042706 |
gtcctttttaca |
7042695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 7058865 - 7058764
Alignment:
| Q |
10 |
agtaagcagaatatt-atattttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcatttccttttt |
108 |
Q |
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|||||||||||| || |||||||| |||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| |||||| | || ||||| |
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| T |
7058865 |
agtaagcagaatcttcatattttcttgccaagatgtgaagcagatagaatcaggaaacaactgaaacatgaaaccttgacattattttcttgtctttttt |
7058766 |
T |
|
| Q |
109 |
ac |
110 |
Q |
| |
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|| |
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| T |
7058765 |
ac |
7058764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 7049923 - 7049848
Alignment:
| Q |
36 |
ccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcatttcctttttaca |
111 |
Q |
| |
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||||||||||||||||| | ||||| |||| |||| |||||||||||||||||| |||||| | | ||||||||| |
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| T |
7049923 |
ccaagatgtgaagaagatggaatcaggaaacaacttaaacatgaaaccttgacattattttcttgttctttttaca |
7049848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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