View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_59 (Length: 238)
Name: NF3030_low_59
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 35413310 - 35413148
Alignment:
| Q |
73 |
agataaaaaaggcatcaagcaatgaggtcgagatatacttgctaacaccaagcatacccctgcctcaccaatgaacaggccgagacacaccaacagaggg |
172 |
Q |
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| T |
35413310 |
agataaaaatggcatcaagcgatgaggctgagatatacttgctaacaccaagcatacccctgcctcaccaatgaacaggccgagactcaccaacataggg |
35413211 |
T |
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| Q |
173 |
aaaccaaactgctgcacaagaacagcaaggacagcagcacacaccagcagaaaaacaccaaaa |
235 |
Q |
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| T |
35413210 |
aaaccgaactgctgcacaagaacagcaacgacagcagcacacaccagtagaaaaacacaaaaa |
35413148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 4787844 - 4787900
Alignment:
| Q |
83 |
ggcatcaagcaatgaggtcgagatatacttgctaacaccaagcatacccctgcctca |
139 |
Q |
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||||||||| ||||||| ||| ||||||||| || |||||||||||||||||||||| |
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| T |
4787844 |
ggcatcaagaaatgaggccgaaatatacttgttagcaccaagcatacccctgcctca |
4787900 |
T |
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