View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_61 (Length: 237)
Name: NF3030_low_61
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13388042 - 13388260
Alignment:
| Q |
1 |
gcttttaaggtggtttttaagagacaattttccacttacatacgtcacacgcaatgagaatatgtgttggatagcagaaaagttaatggggtgcaaaagg |
100 |
Q |
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| T |
13388042 |
gcttttaaggtggtttttaagagacaattttccacttacatacatcacacgcaatgagaatatgtgttggatagcagagaagttaatggggtgcaaaagg |
13388141 |
T |
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| Q |
101 |
aatcacttgtaaaaagtttattactggtggaatatgtatgtttatatgttgtcttgttaataaactcttagagtacatgaagatagttaattcaataatt |
200 |
Q |
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| T |
13388142 |
aatcacttgtaaaaagtttattactggtggaatatgtatgtttatatgttgtctt-ttaataaactctt-gagtatatgaaaatagttaattcaataatt |
13388239 |
T |
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| Q |
201 |
ttttgtcatttatgaagcaag |
221 |
Q |
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| T |
13388240 |
ttttgtcatttatgaagcaag |
13388260 |
T |
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