View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_low_67 (Length: 216)
Name: NF3030_low_67
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 34120174 - 34119993
Alignment:
| Q |
16 |
aagaatatgcagaagaagtagaaaaactagcatataaattgatggaacttattgcaatgagtttgggtttagtaccaaataggttccgtgacttctttat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34120174 |
aagaatatgcagaagaagtagaaaaactagcatataaattgatggaacttattgcaatgagtttgggtttagtaccaaataggttccgtgacttctttat |
34120075 |
T |
|
| Q |
116 |
acataacaccagcaatataagactcaaccattatccaccttgtccctaccctcatctggctcttggtctcggacgtcacaag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34120074 |
acataacaccagcaatataagactcaaccattatccaccttgtccctaccctcatctggctcttggtctcggacgtcacaag |
34119993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 13627313 - 13627145
Alignment:
| Q |
29 |
agaagtagaaaaactagcatataaattgatggaacttattgcaatgagtttgggtttagtaccaaataggttccgtgacttctttatacataacaccagc |
128 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13627313 |
agaagtggagaaactagcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaataggatccgtgacttctttatacataacaccagc |
13627214 |
T |
|
| Q |
129 |
aatataagactcaaccattatccaccttgtccctaccctcatctggctcttggtctcggacgtcacaag |
197 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
13627213 |
aacataagactcaaccattatccaccttgtccctacactcatctggctcttggtcttggacatcacaag |
13627145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 39312720 - 39312871
Alignment:
| Q |
45 |
gcatataaattgatggaacttattgcaatgagtttgggtttagtaccaaataggttccgtgacttctttatacataacaccagcaatataagactcaacc |
144 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39312720 |
gcatataaatttatggaacttattgcagtgagtttaggtttagtaccaaatagggtctatgacttctttatacataacaccagcaacataagactcaacc |
39312819 |
T |
|
| Q |
145 |
attatccaccttgtccctaccctcatctggctcttggtctcggacgtcacaa |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
39312820 |
attatccaccttgtccctacactcatctggctcttggtcttggacatcacaa |
39312871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 47508439 - 47508546
Alignment:
| Q |
82 |
gtttagtaccaaataggttccgtgacttctttatacataacaccagcaatataagactcaaccattatccaccttgtccctaccctcatctggctcttgg |
181 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47508439 |
gtttagtatcaaatagggtccgtgacttctttatacataacaccagcaacataagactcaaccattatccaccttgtccctacactcatctggctcttgg |
47508538 |
T |
|
| Q |
182 |
tctcggac |
189 |
Q |
| |
|
||| |||| |
|
|
| T |
47508539 |
tcttggac |
47508546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 11139507 - 11139552
Alignment:
| Q |
17 |
agaatatgcagaagaagtagaaaaactagcatataaattgatggaa |
62 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
11139507 |
agaatatgcagaagaagtggagaaactagcagataaattgatggaa |
11139552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University