View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3030_low_68 (Length: 208)
Name: NF3030_low_68
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 43531582 - 43531395
Alignment:
| Q |
1 |
aaagctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacagtggggagcaagttggattgaacaatttttaata |
100 |
Q |
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| T |
43531582 |
aaagctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacaatggggagcaagttggattgaacaatttttaata |
43531483 |
T |
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| Q |
101 |
ttgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttg |
188 |
Q |
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| T |
43531482 |
ttgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttg |
43531395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 24128170 - 24128289
Alignment:
| Q |
58 |
taaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatc |
157 |
Q |
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| T |
24128170 |
taaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatc |
24128269 |
T |
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| Q |
158 |
acacaagttctttccactgc |
177 |
Q |
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| T |
24128270 |
acacaagttttatccactgc |
24128289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 24145936 - 24146054
Alignment:
| Q |
59 |
aaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatca |
158 |
Q |
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| T |
24145936 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
24146035 |
T |
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| Q |
159 |
cacaagttctttccactgc |
177 |
Q |
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|||||||| | |||||||| |
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| T |
24146036 |
cacaagttttatccactgc |
24146054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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