View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_low_7 (Length: 560)

Name: NF3030_low_7
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_low_7
NF3030_low_7
[»] chr6 (8 HSPs)
chr6 (408-550)||(14694455-14694597)
chr6 (199-371)||(14694634-14694802)
chr6 (408-542)||(14700876-14701010)
chr6 (7-133)||(14694868-14694995)
chr6 (199-371)||(14701047-14701213)
chr6 (298-364)||(14694075-14694141)
chr6 (71-133)||(14701246-14701308)
chr6 (298-363)||(14700488-14700553)
[»] chr5 (2 HSPs)
chr5 (298-371)||(20523753-20523826)
chr5 (298-350)||(20523983-20524035)
[»] chr1 (1 HSPs)
chr1 (298-371)||(37239351-37239424)
[»] chr2 (1 HSPs)
chr2 (292-329)||(42801902-42801939)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 408 - 550
Target Start/End: Complemental strand, 14694597 - 14694455
Alignment:
Q  408 cattgtttctcttcctccactaatacaccgccatatagatatagtactttagtttagagtcattattgtcgaaaactccattaccaacgaattcgaaact 507  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14694597 cattgtttctcttcctccactgatacagtgccatatagatatagtactttagtttagagtcattgttgtcgaaaactccattaccaacgaattcgaaact 14694498  T
Q  508 tcaaaagtgcccaagtttgctcggtcaaacaatatagtctgtg 550  Q
    |||||||||||||||||||||||| |||  |||||||||||||    
T  14694497 tcaaaagtgcccaagtttgctcggccaattaatatagtctgtg 14694455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 199 - 371
Target Start/End: Complemental strand, 14694802 - 14694634
Alignment:
Q  199 tttgatatttgattagtagtatcaaaatattttttatatcgatctaaatagggttgtggcaagttggttggtttgtttgtaaattaaaaagtgataaaag 298  Q
    |||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| |||||||||||||    |||||||||| ||||||||||||||||    
T  14694802 tttgatatttgattagtagtatcaaagtattttttatatcgttctatatacggttttggcaagttggtt----tgtttgtaaactaaaaagtgataaaag 14694707  T
Q  299 agaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgacacattattt 371  Q
    | ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14694706 aaaaattcttgtatggtctctcacctaacacgtcatctttagtcacaaccaacaaaaacatgacacatcattt 14694634  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 408 - 542
Target Start/End: Complemental strand, 14701010 - 14700876
Alignment:
Q  408 cattgtttctcttcctccactaatacaccgccatatagatatagtactttagtttagagtcattattgtcgaaaactccattaccaacgaattcgaaact 507  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14701010 cattgtttctcttcctccactgatacagtgccatatagatatagtactttagtttagagtcattgttgtcgaaaactccattaccaacgaattcgaaact 14700911  T
Q  508 tcaaaagtgcccaagtttgctcggtcaaacaatat 542  Q
    ||||||||||||||||| |||||| ||||||||||    
T  14700910 tcaaaagtgcccaagttcgctcggccaaacaatat 14700876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 14694995 - 14694868
Alignment:
Q  7 atattaattacggtagttcacacatggagccccacatggaagattgttataatatgcaattaaatcaacatagcccgtaaagagttttattgtcagttgt 106  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||    
T  14694995 atattaattacggtagttcacacatagggccccacatggaagattgttataatatgcaattaaatcaacatagcttgtaaagagttttattgtcagctgt 14694896  T
Q  107 ggttc-atctaaatgcaacccgatccat 133  Q
     |||| ||||||||||||||||||||||    
T  14694895 tgttctatctaaatgcaacccgatccat 14694868  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 371
Target Start/End: Complemental strand, 14701213 - 14701047
Alignment:
Q  199 tttgatatttgattagtagtatcaaaatatttttt-atatcgatctaaatagggttgtggcaagttggttggtttgtttgtaaattaaaaagtgataaaa 297  Q
    ||||||||||||||||||||||| || |||||||| |||||| |||| |||||||| |||||||||||||      |||| ||| |||||||||||||      
T  14701213 tttgatatttgattagtagtatctaagtatttttttatatcgttctatatagggttttggcaagttggttt-----tttgcaaactaaaaagtgataa-- 14701121  T
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgacacattattt 371  Q
    || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14701120 gaaaaattcttgcatggtctctcacctaacacgtcatctttagtcacaaccaacaaaaacatgacacatcattt 14701047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 14694075 - 14694141
Alignment:
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgacac 364  Q
    |||||||||| ||||||||||| | |||| | | ||||||||||||||||||||||||||| |||||    
T  14694075 gagaaattcttgcatggtctcttatctaagaggtcatctttagtcacaaccaacaaaaacaagacac 14694141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 14701308 - 14701246
Alignment:
Q  71 tcaacatagcccgtaaagagttttattgtcagttgtggttc-atctaaatgcaacccgatccat 133  Q
    ||||||||||| |||||||||||||||||||  |||||||| |||| ||||||||||| |||||    
T  14701308 tcaacatagcctgtaaagagttttattgtcaactgtggttctatct-aatgcaacccgttccat 14701246  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 14700488 - 14700553
Alignment:
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgaca 363  Q
    |||||||||| || |||||||| | |||| | | |||||||||| |||||||||||||||| ||||    
T  14700488 gagaaattcttgcttggtctcttatctaagaggtcatctttagtgacaaccaacaaaaacaagaca 14700553  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 20523753 - 20523826
Alignment:
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgacacattattt 371  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||| |||||||  |||| | ||||||| ||||    
T  20523753 gagaaattcttgcatggtctctcacctaacacctcatatttagtctcaaccaatgaaaataggacacatcattt 20523826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 20524035 - 20523983
Alignment:
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaa 350  Q
    |||||||||| ||||||||| |||||||||||  ||| ||||||| |||||||    
T  20524035 gagaaattcttgcatggtctatcacctaacacttcatatttagtctcaaccaa 20523983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 37239351 - 37239424
Alignment:
Q  298 gagaaattctagcatggtctctcacctaacacgccatctttagtcacaaccaacaaaaacatgacacattattt 371  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||| |||||||  |||| | ||||||| ||||    
T  37239351 gagaaattcttgcatggtctctcacctaacacctcatatttagtctcaaccaaagaaaataggacacatcattt 37239424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 42801939 - 42801902
Alignment:
Q  292 ataaaagagaaattctagcatggtctctcacctaacac 329  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  42801939 ataacagagaaattcttgcatggtctctcacctaacac 42801902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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