View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_low_70 (Length: 204)

Name: NF3030_low_70
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_low_70
NF3030_low_70
[»] scaffold0491 (2 HSPs)
scaffold0491 (42-186)||(7764-7908)
scaffold0491 (42-186)||(3134-3284)
[»] chr8 (4 HSPs)
chr8 (42-186)||(18751388-18751535)
chr8 (42-186)||(18741328-18741478)
chr8 (42-186)||(18746292-18746442)
chr8 (42-186)||(18755501-18755649)
[»] chr7 (12 HSPs)
chr7 (42-186)||(1087068-1087215)
chr7 (46-186)||(1559057-1559200)
chr7 (42-186)||(2335964-2336108)
chr7 (42-186)||(1594567-1594714)
chr7 (49-184)||(2319608-2319743)
chr7 (54-186)||(1552305-1552440)
chr7 (54-184)||(1542998-1543131)
chr7 (42-179)||(1602804-1602947)
chr7 (64-186)||(3956964-3957086)
chr7 (54-184)||(1104294-1104430)
chr7 (65-182)||(2327846-2327963)
chr7 (114-184)||(3851671-3851741)


Alignment Details
Target: scaffold0491 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 7908 - 7764
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaac 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaac 7809  T
Q  142 ttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7808 ttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 7764  T

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Target: scaffold0491; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 3284 - 3134
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttat---ttgcggtttggttgagggaactcaatctgccacaatgacatctc 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  3284 tatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactcaatctgccacaatgacatctc 3185  T
Q  139 a---acttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  3184 atcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 3134  T

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Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18751535 - 18751388
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatc---tc 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  18751535 tatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcatc 18751436  T
Q  139 aacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18751435 aacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 18751388  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18741478 - 18741328
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttat---ttgcggtttggttgagggaactcaatctgccacaatgacatctc 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  18741478 tatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactcaatctgccacaatgacatctc 18741379  T
Q  139 a---acttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  18741378 atcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 18741328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18746442 - 18746292
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttat---ttgcggtttggttgagggaactcaatctgccacaatgacatctc 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  18746442 tatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactcaatctgccacaatgacatctc 18746343  T
Q  139 a---acttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  18746342 atcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 18746292  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18755649 - 18755501
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc---tgccacaatgacatctc 138  Q
    |||||| ||||||||||| |||||||||| |||||||  | ||||||||||||||| ||| || | ||||||||||||||   ||| |||||||||| ||    
T  18755649 tatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttatttggggtgtgatcgagggaactcaatcttttgctacaatgacatatc 18755550  T
Q  139 aacttcaaatggaagcaaatg-ctatattaaatagtggatggtggaaca 186  Q
    || |||||||||||||||||| ||||||||||  |||||||||||||||    
T  18755549 aatttcaaatggaagcaaatgcctatattaaaccgtggatggtggaaca 18755501  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 1087068 - 1087215
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgc---cacaatgacatctc 138  Q
    |||||| ||||||||||||||| ||||||||||||||| | ||||||| |||||||| ||||| ||| |||||||||||||||   ||| ||||||||||    
T  1087068 tatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattatttgcagtttgattgtgggaactcaatctgctgccactatgacatctc 1087167  T
Q  139 aacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  1087168 aacttcaaatggaagcaaatgctataataaagagtggatggtggaaca 1087215  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 1559200 - 1559057
Alignment:
Q  46 taatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc---tgccacaatgacatctcaact 142  Q
    |||||||||||||| ||||||||||||||| ||| | ||||||| |||||||| ||||| ||| ||||||||||||   ||||||  |||||||||||||    
T  1559200 taatttcaaatttccttggtccaaaaatgttgattgcctttcttattatttgcagtttgattgtgggaactcaatccgctgccactgtgacatctcaact 1559101  T
Q  143 tcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  1559100 tcaaatggaagcaaatgctatatcgaatagtggatggtggaaca 1559057  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 2335964 - 2336108
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaac 141  Q
    |||||| |||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||||||||||||||||||| ||||||||    
T  2335964 tatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtactcaatctgccacaatgaaatctcaac 2336063  T
Q  142 ttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    ||||||||||||||||||||||| | |||||||||||||||||||    
T  2336064 ttcaaatggaagcaaatgctataatgaatagtggatggtggaaca 2336108  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 1594567 - 1594714
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctc--- 138  Q
    |||||||||||||||| ||||||||||||||||  ||| | |||||||||||||||| || ||  || ||||||||||||||||| || ||||||||       
T  1594567 tatttaatttcaaattcctttggtccaaaaatgatgattgcctttcttcttatttgcagtctgactgtgggaactcaatctgccaaaacgacatctcata 1594666  T
Q  139 aacttcaaatggaagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1594667 aacttcaaatggaagcaaatgcaataataaagagtggatggtggaaca 1594714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 2319608 - 2319743
Alignment:
Q  49 tttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaacttcaaat 148  Q
    |||| ||||||| |||||  |||||||||||||||||||||||||||||   |||  ||| ||| |||||||||||| || |||||||||||| ||| ||    
T  2319608 tttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggcctttcattgtgggtactcaatctgcctcagtgacatctcaacctcatat 2319707  T
Q  149 ggaagcaaatgctatattaaatagtggatggtggaa 184  Q
    |||||||||||| |||||||||||||||||||||||    
T  2319708 ggaagcaaatgcgatattaaatagtggatggtggaa 2319743  T

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Target: chr7; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 1552440 - 1552305
Alignment:
Q  54 aatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatct---gccacaatgacatctcaacttcaaatgg 150  Q
    |||||||||||||||||||||||||| | |||||||  ||||||||||||| ||   |||||||| |||   || ||  |||||||||||||||||||||    
T  1552440 aatttctttggtccaaaaatgtggattgcctttcttactatttgcggtttgattatcggaactcagtcttctgctactgtgacatctcaacttcaaatgg 1552341  T
Q  151 aagcaaatgctatattaaatagtggatggtggaaca 186  Q
    |||||||||| |||||||||||||||||||||||||    
T  1552340 aagcaaatgcaatattaaatagtggatggtggaaca 1552305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 1543131 - 1542998
Alignment:
Q  54 aatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgc---cacaatgacatctcaacttcaaatgg 150  Q
    |||||||||||| |||| ||||||||| ||||| ||| || |||||||||| |||  |||||||||||| |   |||  |||||||||||||||||||||    
T  1543131 aatttctttggttcaaacatgtggatgctcttttttcctacttgcggtttgattgtcggaactcaatctactcccactgtgacatctcaacttcaaatgg 1543032  T
Q  151 aagcaaatgctatattaaatagtggatggtggaa 184  Q
    |||||||||||||||| |||||||||||||||||    
T  1543031 aagcaaatgctatattgaatagtggatggtggaa 1542998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 1602804 - 1602947
Alignment:
Q  42 tatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaat---ctgccacaatgacatc-- 136  Q
    |||||| ||||||||||||||||| ||||||| |||||| ||||| |||||||||| | |||| ||| ||||| |||||   |||| ||  |||||||      
T  1602804 tatttagtttcaaatttctttggttcaaaaatatggatgctcttttttcttatttgggatttgattgtgggaattcaatctgctgctactgtgacatctc 1602903  T
Q  137 -tcaacttcaaatggaagcaaatgctatattaaatagtggatgg 179  Q
     |||||||||||||||||||||||||||||| ||||||||||||    
T  1602904 atcaacttcaaatggaagcaaatgctatattgaatagtggatgg 1602947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 3957086 - 3956964
Alignment:
Q  64 gtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaacttcaaatggaagcaaatgctat 163  Q
    ||||||||||||||| | | |||||||||| ||| |||||| |   ||| ||||||| || || | ||||||||||||||||||||||||||||||| ||    
T  3957086 gtccaaaaatgtggaagatttttcttcttacttggggtttgttcatggggactcaatttgtcatagtgacatctcaacttcaaatggaagcaaatgcaat 3956987  T
Q  164 attaaatagtggatggtggaaca 186  Q
    | ||||||||| |||||||||||    
T  3956986 actaaatagtgaatggtggaaca 3956964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 1104294 - 1104430
Alignment:
Q  54 aatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaa---tgacatctca---acttcaaa 147  Q
    |||||||||||| |||| ||||||||| ||||| ||| ||||||||||||| |||  |||| | |||||||  | |   ||||||||||   ||||||||    
T  1104294 aatttctttggttcaaacatgtggatgctcttttttcctatttgcggtttgattgttggaattgaatctgctgctactgtgacatctcatcaacttcaaa 1104393  T
Q  148 tggaagcaaatgctatattaaatagtggatggtggaa 184  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1104394 tggaagcaaatgctatattgaatagtggatggtggaa 1104430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 2327846 - 2327963
Alignment:
Q  65 tccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaacttcaaatggaagcaaatgctata 164  Q
    ||||||||||||| ||||||||||||||| ||| |||||| |   ||| |||| |||||   ||||||||||||||||||||||||||||| ||| ||||    
T  2327846 tccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatctggggcaatgacatctcaacttcaaatggaagcagatgttata 2327945  T
Q  165 ttaaatagtggatggtgg 182  Q
      ||||| ||||||||||    
T  2327946 caaaataatggatggtgg 2327963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 3851671 - 3851741
Alignment:
Q  114 actcaatctgccacaatgacatctcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaa 184  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||  || | |||||||||| ||||||    
T  3851671 actcaatttgccatagtgacatctcaacttcaaatggaagcaaatgcagtagtcaatagtggattgtggaa 3851741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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