View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3030_low_71 (Length: 201)
Name: NF3030_low_71
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3030_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 4058887 - 4059026
Alignment:
| Q |
49 |
tgctatttccggtggtgaagagtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata-catg |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4058887 |
tgctatttccggtggtgaagagtgggaatggaggagagagaagagtggtaggagagtgtgtgaaaaatatctagtgttaacagtctatgataataccatg |
4058986 |
T |
|
| Q |
148 |
ttctccatttaatccaatagtaaaaatcaactttcctatg |
187 |
Q |
| |
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|||||||||| ||| |||||| |||||||||||||||||| |
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| T |
4058987 |
ttctccatttgatctaatagtcaaaatcaactttcctatg |
4059026 |
T |
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Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 42915677 - 42915820
Alignment:
| Q |
45 |
ttgatgctatttccggtggtgaagagtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata- |
143 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42915677 |
ttgatgctatttccggtggtgaatagtgggaatggaggagagagaagagtgatgggagagagtgtgaaaaatatctagtgttaagagtctatgataatac |
42915776 |
T |
|
| Q |
144 |
catgttctccatttaatccaatagtaaaaatcaactttcctatg |
187 |
Q |
| |
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|||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
42915777 |
catgttctttatttaatttaatagtcaaaatcaactttcctatg |
42915820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 26246249 - 26246388
Alignment:
| Q |
49 |
tgctatttccggtggtgaagagtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata-catg |
147 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| |
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| T |
26246249 |
tgctatttctggtggtgaagagtgggaatggaggagagagaagactggtaggagagtgtgtaaaaaatatctattgttaacagtctatgataataccatg |
26246348 |
T |
|
| Q |
148 |
ttctccatttaatccaatagtaaaaatcaactttcctatg |
187 |
Q |
| |
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|||||||||| || ||||| |||||||||||||||||| |
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|
| T |
26246349 |
ttctccatttgatataatagccaaaatcaactttcctatg |
26246388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 24126609 - 24126724
Alignment:
| Q |
69 |
agtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata-catgttctccatttaatccaatag |
167 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||| |||||||||||| || |
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| T |
24126609 |
agtggggatggaggagagagaagagtggtaggagagagtctgaaaaatatctagtgttaagagtccataataataccatgttcttcatttaatccaaaag |
24126708 |
T |
|
| Q |
168 |
taaaaatcaactttcc |
183 |
Q |
| |
|
| || ||||||||||| |
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|
| T |
24126709 |
ttaagatcaactttcc |
24126724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 47377009 - 47376894
Alignment:
| Q |
69 |
agtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata-catgttctccatttaatccaatag |
167 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||| |||||||||||| || |
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| T |
47377009 |
agtggggatggaggagagagaagagtggtaggagagagtctgaaaaatatctagtgttaagagtccataataataccatgttcttcatttaatccaaaag |
47376910 |
T |
|
| Q |
168 |
taaaaatcaactttcc |
183 |
Q |
| |
|
| || ||||||||||| |
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|
| T |
47376909 |
ttaagatcaactttcc |
47376894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 56417677 - 56417633
Alignment:
| Q |
45 |
ttgatgctatttccggtggtgaagagt-gggaatggaggagagag |
88 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
56417677 |
ttgatgctatttccggtggtgaagagtggggaatggaggagagag |
56417633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 56417822 - 56417781
Alignment:
| Q |
48 |
atgctatttccggtggtgaagagt-gggaatggaggagagag |
88 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
56417822 |
atgctatttctggtggtgaagagtggggaatggaggagagag |
56417781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 41882328 - 41882206
Alignment:
| Q |
67 |
agagtgggaatggaggagagagaagagtggtaggagagagtgtgaaaaatatctagtg-ttaagagtctatgataata-catgttctccatttaatccaa |
164 |
Q |
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|
|||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||| |||||| |
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| T |
41882328 |
agagtgaggatggaggagagatgagagtggcaggagagagtgtgaaaaatatctagtgtttaagagtccatgataataccatgttcttcatttgatccaa |
41882229 |
T |
|
| Q |
165 |
tagtaaaaatcaactttcctatg |
187 |
Q |
| |
|
|||| | |||||||||||||||| |
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|
| T |
41882228 |
tagtcagaatcaactttcctatg |
41882206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 41884135 - 41884239
Alignment:
| Q |
84 |
gagagaagagtggtaggagagagtgtgaaaaatatctagtgttaagagtctatgataata-catgttctccatttaatccaatagtaaaaatcaactttc |
182 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||| ||| |||||| | ||||||||||| |
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| T |
41884135 |
gagagaagagtaataggagagattgtgaaaaatttctagtgttaagagtccatgataatatcatgttcttcatttgatctaatagttagaatcaactttc |
41884234 |
T |
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| Q |
183 |
ctatg |
187 |
Q |
| |
|
||||| |
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|
| T |
41884235 |
ctatg |
41884239 |
T |
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